https://github.com/alleninstitute/abc_atlas_access - v3.1.5

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.1.4...v3.1.5

- Jupyter Notebook
Published by morriscb about 1 year ago

https://github.com/alleninstitute/abc_atlas_access - v3.1.4

What's Changed

• Add ASAP-PMDBS dataset. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/75
• rc/0.6.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/74

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.1.3...v3.1.4

- Jupyter Notebook
Published by morriscb over 1 year ago

https://github.com/alleninstitute/abc_atlas_access - v3.1.3

What's Changed

• Update aging UMAP coords by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/71
• Rc/0.5.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/72

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.1.2...v3.1.3

- Jupyter Notebook
Published by morriscb over 1 year ago

https://github.com/alleninstitute/abc_atlas_access - v3.1.2

What's Changed

• Separate out dependencies in pyproject. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/67
• Aging Mouse notebooks by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/64
• Rc/0.4.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/68

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.1.1...v3.1.2

- Jupyter Notebook
Published by morriscb over 1 year ago

https://github.com/alleninstitute/abc_atlas_access - v3.1.1

What's Changed

• Add missing imputed merfish link. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/59
• Fixup link. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/60
• Rc/0.3.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/63

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.1.0...v3.1.1

- Jupyter Notebook
Published by morriscb over 1 year ago

https://github.com/alleninstitute/abc_atlas_access - v3.1.0

What's Changed

• Rc/0.2.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/52

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.0.2...v3.1.0

- Jupyter Notebook
Published by morriscb almost 2 years ago

https://github.com/alleninstitute/abc_atlas_access - v3.0.2

What's Changed

• Create script to run gene selection from expression matrices for running on CodeOcean. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/49
• Add matplotlib magic and bug fixes. https://github.com/AllenInstitute/abcatlasaccess/pull/50

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.0.1...v3.0.2

- Jupyter Notebook
Published by morriscb about 2 years ago

https://github.com/alleninstitute/abc_atlas_access - v3.0.1

What's Changed

• Rc/0.1.0 by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/47
• Compatibility for read only caches in https://github.com/AllenInstitute/abcatlasaccess/pull/48

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v3.0.0...v3.0.1

- Jupyter Notebook
Published by morriscb about 2 years ago

https://github.com/alleninstitute/abc_atlas_access - Add Siletti et al., WHB data and provide AbcProjectCache object.

Release Notes

• [Spring 2024 Public Beta (version 20240330)]
  • Added Whole Human Brain transcriptomic, taxonomy and clustering datasets from Siletti et al. 2023 to the ABC Atlas.
  • Added new AbcProjectCache python class to facilitate data download and usage.
  • Added file hashes to the manifest.json to facilitate data integrity checks in the cache class.
  • Updated all jupyter notebooks to use the new AbcProjectCache class.
  • Added new notebooks for the whole human brain datasets.
  • Re-organized jupyter-book webpages.

What's Changed

• update data and notebooks to reflect minor WMB updates by @lydiang in https://github.com/AllenInstitute/abcatlasaccess/pull/32
• Create Manifest and FileAttributes class by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/35
• Create initial S3 cache objects by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/36
• Create user facing cache object by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/37
• Modify jupyter book pages and notebooks. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/38
• Add new cache object and upate notebooks/webpage for WHB release. by @morriscb in https://github.com/AllenInstitute/abcatlasaccess/pull/45

New Contributors

• @morriscb made their first contribution in https://github.com/AllenInstitute/abcatlasaccess/pull/35

Full Changelog: https://github.com/AllenInstitute/abcatlasaccess/compare/v2.0.0...v3.0.0

- Jupyter Notebook
Published by morriscb over 2 years ago

https://github.com/alleninstitute/abc_atlas_access - ABC Atlas data release - Sept 2023

Documentation and examples demonstrating how to access data used in the Sept 2023 release of the Allen Brain Cell Atlas.

- Jupyter Notebook
Published by lydiang over 2 years ago

https://github.com/alleninstitute/abc_atlas_access - ABC Atlas data release - June/July 2023

Documentation and examples demonstrating how to access data used in the June/July release of the Allen Brain Cell Atlas.

- Jupyter Notebook
Published by lydiang about 3 years ago