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Open Source Science

https://github.com/alleninstitute/neuroanalysis

Modular analysis tools for neurophysiology data

https://github.com/alleninstitute/neuroanalysis

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    5 of 9 committers (55.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.4%) to scientific vocabulary

Keywords from Contributors

qt
Last synced: 10 months ago · JSON representation

Repository

Modular analysis tools for neurophysiology data

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 8.06 MB
Statistics
  • Stars: 9
  • Watchers: 5
  • Forks: 11
  • Open Issues: 2
  • Releases: 0
Created almost 9 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License

README.md

Neuroanalysis

Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology.

Tests PyPI version

  • Functions for running common analysis algorithms
    • Synaptic/calcium event detection and characterization
    • Synaptic release modeling
    • VC and CC spike detection and characterization
    • VC and CC test pulse analysis
    • Basic signal processing (filtering, baseline removal, etc.)
  • Data abstraction layer to allow adapting new data formats (see neuroanalysis/data.py)
  • Re-usable user interface elements for implementing common analysis tasks

Status

This project is early in development and does not yet have a stable API. Issues and pull requests are accepted (see CONTRIBUTING.md), but may not be reviewed or accepted on any fixed schedule.

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
  • Watch event: 1
  • Push event: 7
  • Pull request event: 1
  • Fork event: 1
Last Year
  • Watch event: 1
  • Push event: 7
  • Pull request event: 1
  • Fork event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 556
  • Total Committers: 9
  • Avg Commits per committer: 61.778
  • Development Distribution Score (DDS): 0.385
Past Year
  • Commits: 132
  • Committers: 2
  • Avg Commits per committer: 66.0
  • Development Distribution Score (DDS): 0.106
Top Committers
Name Email Commits
Luke Campagnola l****c@a****g 342
Martin Chase o****e@g****m 133
Megan Kratz m****z@g****m 53
Corinne Teeter c****t@a****g 13
ALLENINST\stephanies s****s@a****g 6
jung g****8@g****m 3
Alice B A****B@a****g 3
Alice Bosma-Moody a****y@g****m 2
Tom Chartrand t****d@a****g 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 5

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 15
  • Average time to close issues: N/A
  • Average time to close pull requests: 21 days
  • Total issue authors: 1
  • Total pull request authors: 4
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.2
  • Merged pull requests: 13
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • t-b (1)
Pull Request Authors
  • outofculture (12)
  • meganbkratz (5)
  • scseeman (1)
  • tmchartrand (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 198 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 7
  • Total maintainers: 2
pypi.org: neuroanalysis

Functions and modular user interface tools for analysis of patch clamp experiment data.

  • Documentation: https://neuroanalysis.readthedocs.io/
  • License: Copyright (c) 2016- Allen Institute for Brain Science The MIT License Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  • Latest release: 0.0.7
    published over 1 year ago
  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 198 Last month
Rankings
Dependent packages count: 9.8%
Forks count: 10.9%
Stargazers count: 20.4%
Dependent repos count: 21.8%
Average: 27.0%
Downloads: 71.8%
Maintainers (2)
lcampagn Martin.Chase
Last synced: 11 months ago