https://github.com/alleninstitute/sourcesep
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- Language: Jupyter Notebook
- Default Branch: main
- Size: 87.5 MB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
readme.md
Description
Pre-processing and source separation algorithms for neuromodulator signals in hyperspectral fiber photometry experiments.
Environment
conda create -n sourcesep python=3.12
conda install pytorch torchvision torchaudio pytorch-cuda=12.4 -c pytorch -c nvidia
pip install lightning tensorboard
pip install -e .[dev]
Config
Config.toml contents:
['all']
root='/data/'
spectra='/data/spectra/'
pilot='/data/pilot/'
Data directory structure. (Download data from this dropbox link)
data
├── pilot
│ ├── GCaMP8s_1.csv
│ ├── GCaMP8s_2.csv
│ ├── GCaMP8s_3.csv
│ └── test.hdf5
├── sims
│ ├── 2023-02-24.h5
│ └── 2023-02-24.toml
├── sim_config.toml
├── calibrate_px_to_nm.tif
└── spectra
├── EGFP.csv
├── HbAbs.csv
├── Venus.csv
├── mApple.csv
└── pathlength.csv
Documentation
./qdocs contains source files for the quarto project rendered in ./docs, which can be viewed as a github pages website.
Contributors:
Rohan Gala, Smrithi Sunil, Kaspar Podgorski, Uygar Sümbül
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Push event: 2
Last Year
- Push event: 2
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0