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https://github.com/alleninstitute/neuroglia

a Python machine learning library for neurophysiology data

https://github.com/alleninstitute/neuroglia

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    5 of 9 committers (55.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.1%) to scientific vocabulary

Keywords

calcium-imaging electrophysiology machine-learning neurophysiology neuroscience nwb open-science python scikit-learn
Last synced: 5 months ago · JSON representation

Repository

a Python machine learning library for neurophysiology data

Basic Info
Statistics
  • Stars: 36
  • Watchers: 17
  • Forks: 7
  • Open Issues: 19
  • Releases: 0
Topics
calcium-imaging electrophysiology machine-learning neurophysiology neuroscience nwb open-science python scikit-learn
Created over 8 years ago · Last pushed over 7 years ago

https://github.com/AllenInstitute/neuroglia/blob/master/ 

# neuroglia: more than just brain glue

Neuroglia is a Python machine learning library for neurophysiology data.
It features scikit-learn compatible transformers for extracting features from extracellular electrophysiology & optical physiology data for machine learning pipelines.

[![DOI](https://zenodo.org/badge/98463320.svg)](https://zenodo.org/badge/latestdoi/98463320)
[![CircleCI](https://circleci.com/gh/AllenInstitute/neuroglia.svg?style=shield&circle-token=d0a164bbf19524a24f0d6bc42535aab9c89f8c13)](https://circleci.com/gh/AllenInstitute/neuroglia)
[![Travis](https://travis-ci.org/AllenInstitute/neuroglia.svg?branch=master)](https://travis-ci.org/AllenInstitute/neuroglia)
[![AppVeyor](https://img.shields.io/appveyor/ci/mochic/neuroglia/master.svg)](https://ci.appveyor.com/project/mochic/neuroglia)
[![Documentation Status](https://readthedocs.org/projects/neuroglia/badge/?version=latest)](http://neuroglia.readthedocs.io/en/latest/?badge=latest)
[![codecov.io](https://codecov.io/gh/AllenInstitute/neuroglia/branch/master/graph/badge.svg)](https://codecov.io/gh/AllenInstitute/neuroglia)
[![Requirements Status](https://requires.io/github/AllenInstitute/neuroglia/requirements.svg?branch=master)](https://requires.io/github/AllenInstitute/neuroglia/requirements/?branch=master)
[![Say Thanks!](https://img.shields.io/badge/Say%20Thanks-!-1EAEDB.svg)](https://saythanks.io/to/neuromusic)


## Installation

`pip install git+https://github.com/AllenInstitute/neuroglia.git`

## Level of Support

We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.

## License

[BSD-3-Clause](LICENSE)

## Authors

### Development Lead
- Justin Kiggins

### Contributors
- Nicholas Cain
- Michael Oliver
- Sahar Manavi
- Johannes Friedrich
- Christopher Mochizuki

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 251
  • Total Committers: 9
  • Avg Commits per committer: 27.889
  • Development Distribution Score (DDS): 0.422
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Justin Kiggins j****k@a****g 145
mochic808 c****m@a****g 36
Justin Kiggins j****s@g****m 20
Christopher Mochizuki c****i@g****m 19
Michael Oliver m****r@g****m 14
nicholasc n****c@a****g 10
Sahar s****m@a****g 3
Johannes Friedrich j****h@f****g 3
NileGraddis n****s@g****m 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 4 flatironinstitute.org: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 43
  • Total pull requests: 57
  • Average time to close issues: 3 months
  • Average time to close pull requests: 14 days
  • Total issue authors: 6
  • Total pull request authors: 5
  • Average comments per issue: 0.6
  • Average comments per pull request: 0.96
  • Merged pull requests: 47
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • neuromusic (34)
  • mochic (3)
  • nicain (2)
  • pllim (1)
  • NileGraddis (1)
  • mpmbq2 (1)
Pull Request Authors
  • neuromusic (33)
  • mochic (19)
  • j-friedrich (3)
  • saharmanavi (1)
  • NileGraddis (1)
Top Labels
Issue Labels
enhancement (19) bug (8) docs (6) help wanted (4) good first issue (4) question (1)
Pull Request Labels
enhancement (4) help wanted (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 21 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 1
  • Total maintainers: 2
pypi.org: neuroglia

scikit-learn compatible transformers for neural data science

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 21 Last month
Rankings
Dependent packages count: 7.3%
Stargazers count: 10.7%
Forks count: 12.6%
Average: 18.1%
Dependent repos count: 22.1%
Downloads: 37.6%
Maintainers (2)
mochic neuromusic
Last synced: 7 months ago

Dependencies

environment.yml conda
  • cython
  • numpy
  • pandas
  • pytest
  • pytest-cov
  • python 3.5.*
  • scikit-learn
  • scipy
  • xarray
docs/binder/requirements.txt pypi
  • allensdk *
  • neuroglia *
  • pandas *
  • scikit-learn *
  • xarray *
docs/requirements.txt pypi
  • numpy *
  • pandas *
  • scikit-learn *
  • scipy *
  • xarray *
requirements-dev.txt pypi
  • bump2version * development
  • cython * development
  • pytest * development
  • pytest-cov * development
requirements-doc.txt pypi
  • allensdk *
  • mock *
  • pillow *
  • seaborn *
  • sphinx *
  • sphinx-gallery *
  • sphinx_bootstrap_theme *
requirements.txt pypi
  • Cython *
  • numpy *
  • pandas *
  • scikit-learn *
  • scipy *
  • xarray *
setup.py pypi
  • numpy *
  • pandas *
  • scikit-learn *
  • scipy *
  • xarray *