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Open Source Science

https://github.com/alleninstitute/mtg_celltypes

Human cortical cell types

https://github.com/alleninstitute/mtg_celltypes

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 3 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.9%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Human cortical cell types

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: R
  • Default Branch: master
  • Size: 632 KB
Statistics
  • Stars: 24
  • Watchers: 5
  • Forks: 7
  • Open Issues: 1
  • Releases: 0
Created over 7 years ago · Last pushed almost 7 years ago
Metadata Files
Readme License

README.md

Human cortical cell types

Code to generate figures for the manuscript "Conserved cell types with divergent features in human versus mouse cortex" describing transcriptomic cell types in adult human neocortex.

Level of support

We are not currently supporting this code, but simply releasing it to the community AS IS but are not able to provide any guarantees of support. The community is welcome to submit issues, but you should not expect an active response.

Notes

  • Run "Code0prepareComparisonDataSets" and then "Code1buildDendrogram" prior to running other scripts, which can be run in any order (Support... functions do not need to be run)
  • The two "Code_metaNeighbor" take several hours to several days to run, while the other scripts are relatively fast
  • Several files need to be downloaded and unzipped prior to running code, as explained in "Code0prepareComparisonDataSets" and "Code_correlationWithOtherDatasets.r"

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 31
  • Total Committers: 3
  • Avg Commits per committer: 10.333
  • Development Distribution Score (DDS): 0.548
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Trygve Bakken t****b@a****g 14
Jeremy Miller j****m@a****g 13
Trygve Bakken t****b@I****g 4
Committer Domains (Top 20 + Academic)
alleninstitute.org: 2 ibs-hct-ux1.corp.alleninstitute.org: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • BKLi (1)
Pull Request Authors
Top Labels
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