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https://github.com/alleninstitute/et_connectivity

Code used to analyze the connectivity of ET neurons in MICrONs dataset

https://github.com/alleninstitute/et_connectivity

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: biorxiv.org
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ✓
    Institutional organization owner
    Organization alleninstitute has institutional domain (alleninstitute.org)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Code used to analyze the connectivity of ET neurons in MICrONs dataset

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 145 MB
Statistics
  • Stars: 4
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 2 years ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

ET_connectivity

Code used to generate main figures in ET manuscript posted in https://www.biorxiv.org/content/10.1101/2023.10.18.562531v1.full (code for some, but not all extended figures are included)

System requirements:

Language: Jutpiter Notebooks

Tested on Python version 3.10.4

Requrires aditional packages instalations (e.g. matplotlib, pandas, etc)

Connectivity matrices representing the synapse output of ET neurons and their post synaptic targets are saved as feather files. "ETcolumnsynapsetable.feather" is the connectivity matrix used in Figure 2. "ETextendedsynapsetable.feather" is the connectivity matrix used in Figures 3 and 4.

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
  • Watch event: 1
  • Delete event: 1
  • Member event: 1
  • Push event: 30
  • Pull request event: 14
  • Fork event: 1
  • Create event: 2
Last Year
  • Watch event: 1
  • Delete event: 1
  • Member event: 1
  • Push event: 30
  • Pull request event: 14
  • Fork event: 1
  • Create event: 2

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 37
  • Total Committers: 3
  • Avg Commits per committer: 12.333
  • Development Distribution Score (DDS): 0.459
Past Year
  • Commits: 27
  • Committers: 3
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.519
Top Committers
Name Email Commits
Nuno Macarico da Costa n****d@a****g 20
nmda y****u@e****d@a****g 12
Naixin Ren 3****n 5
Committer Domains (Top 20 + Academic)
example.comnunod: 1 alleninstitute.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 14
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 minutes
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 14
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 14
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 14
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • nmda (13)
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