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Open Source Science

https://github.com/alleninstitute/great_ape_mtg

snRNA-seq of temporal cortex in great apes

https://github.com/alleninstitute/great_ape_mtg

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 6 committers (16.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

snRNA-seq of temporal cortex in great apes

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 69.9 MB
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created about 6 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.md

Comparative transcriptomics reveals human-specific cortical features

Analysis for a manuscript focused on comparative analysis of single nucleus RNA-seq data derived from post-mortem cortical tissue from humans and four non-human primate species: chimpanzees, gorillas, rhesus macaques, and common marmosets.

  • Citation: http://dx.doi.org/10.1126/science.ade9516
  • Preprint: https://doi.org/10.1101/2022.09.19.508480
  • Data files associated with this repository: https://data.nemoarchive.org/publicationrelease/GreatApeMTGAnalysis/
  • Raw data: https://assets.nemoarchive.org/dat-net1412
  • cellxgene Viewer: https://cellxgene.cziscience.com/collections/4dca242c-d302-4dba-a68f-4c61e7bad553
  • Cytosplore Viewer: https://viewer.cytosplore.org/

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 38
  • Total Committers: 6
  • Avg Commits per committer: 6.333
  • Development Distribution Score (DDS): 0.342
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Trygve Bakken t****b@a****g 25
ktravaglini 3****i 5
Emily Gelfand 4****2 3
Janet Song j****g@J****l 3
njorstad 5****d 1
Brian Long b****l 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: about 2 months
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
Pull Request Authors
  • pbandjanet (2)
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