https://github.com/alleninstitute/dipde
Numerical solver for coupled population density equations
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Numerical solver for coupled population density equations
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: gpl-3.0
- Language: Python
- Default Branch: dev
- Homepage: http://alleninstitute.github.io/dipde
- Size: 2.16 MB
Statistics
- Stars: 24
- Watchers: 10
- Forks: 14
- Open Issues: 8
- Releases: 0
Topics
Metadata Files
README.md
DiPDE (dipde) is a simulation platform for numerically solving the time evolution of coupled networks of neuronal populations. Instead of solving the subthreshold dynamics of individual model leaky-integrate-and-fire (LIF) neurons, dipde models the voltage distribution of a population of neurons with a single population density equation. In this way, dipde can facilitate the fast exploration of mesoscale (population-level) network topologies, where large populations of neurons are treated as homogeneous with random fine-scale connectivity.
Level of support
We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.
Copyright 2020 Allen Institute
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Watch event: 2
- Fork event: 1
Last Year
- Watch event: 2
- Fork event: 1
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Nicholas Cain | n****c@a****g | 131 |
| Nicholas Cain | n****e@g****m | 14 |
| kaeldai | k****i@g****m | 5 |
| Shival Dasu | s****2@g****m | 3 |
| dependabot[bot] | 4****] | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 8
- Total pull requests: 8
- Average time to close issues: 4 months
- Average time to close pull requests: 2 months
- Total issue authors: 4
- Total pull request authors: 3
- Average comments per issue: 1.63
- Average comments per pull request: 0.38
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 5
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- nicain (5)
- sanjayankur31 (1)
- keszybz (1)
- espenhgn (1)
Pull Request Authors
- dependabot[bot] (5)
- nicain (2)
- kaeldai (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- matplotlib 1.5.*
- mpi4py 2.0.0
- numpy 1.10.*
- pandas 0.16.*
- pytest 2.8.*
- pytest-cov 2.2.*
- python 2.7.*
- pyzmq 15.2.*
- scipy 0.16.*
- setuptools 7.*
- sympy 1.0.*
- coverage ==4.2
- cycler ==0.10.0
- dipde ==0.2.0
- matplotlib ==1.5.1
- mpi4py ==2.0.0
- mpmath ==0.19
- numpy ==1.22.0
- pandas ==0.16.2
- py ==1.4.31
- pyparsing ==2.1.4
- pytest ==2.8.5
- pytest-cov ==2.2.1
- python-dateutil ==2.6.0
- pytz ==2016.7
- pyzmq ==15.2.0
- scipy ==0.16.1
- six ==1.10.0
- sympy ==1.0