https://github.com/alleninstitute/ophys_etl_pipelines
Pipelines and modules for processing optical physiology data
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
7 of 12 committers (58.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.6%) to scientific vocabulary
Keywords from Contributors
Repository
Pipelines and modules for processing optical physiology data
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: other
- Language: Python
- Default Branch: main
- Size: 29.7 MB
Statistics
- Stars: 11
- Watchers: 6
- Forks: 5
- Open Issues: 78
- Releases: 0
Metadata Files
README.md
ophysetlpipelines
Pipelines and modules for processing optical physiology data
Level of support
We are not currently supporting this code, but simply releasing it to the community AS IS. We are not able to provide any guarantees of support. The community may submit issues, but you should not expect an active response.
Contributing
This tool is important for internal use at the Allen Institute. Because it's designed for internal needs, we are not anticipating external contributions. Pull requests may not be accepted if they conflict with our existing plans.
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Watch event: 2
- Push event: 4
- Pull request event: 4
- Create event: 1
Last Year
- Watch event: 2
- Push event: 4
- Pull request event: 4
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| danielsf | s****l@a****g | 608 |
| Dan | d****k@a****g | 206 |
| Jed Perkins | p****d@g****m | 66 |
| Mike Huang | h****e@g****m | 53 |
| Nicholas Mei | n****i@a****g | 48 |
| Christopher B. Morrison | c****n@a****g | 29 |
| Kat Schelonka | k****n@g****m | 25 |
| Adam Amster | a****r@a****g | 22 |
| matyasz | t****z@g****m | 21 |
| samiamseid | s****s@a****g | 16 |
| ross hytnen | r****h@a****g | 3 |
| isaak-willett | 5****t | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 88
- Total pull requests: 94
- Average time to close issues: about 1 month
- Average time to close pull requests: 4 days
- Total issue authors: 5
- Total pull request authors: 6
- Average comments per issue: 2.25
- Average comments per pull request: 1.63
- Merged pull requests: 78
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- wbwakeman (19)
- djkapner (15)
- pickles-bread-and-butter (7)
- njmei (7)
- kschelonka (2)
Pull Request Authors
- djkapner (24)
- njmei (18)
- samiamseid (9)
- kschelonka (5)
- pickles-bread-and-butter (2)
- dependabot[bot] (1)
- Matyasz (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- argschema ==2.0.2
- boto3 *
- coverage *
- croissant-ml ==0.0.3
- h5py *
- imageio-ffmpeg *
- matplotlib *
- moto *
- networkx *
- numpy *
- pandas *
- pytest *
- scikit-image *
- scipy *
- suite2p ==0.10.2
- tifffile *
- typing_extensions *
- continuumio/miniconda3 4.8.2 build
- continuumio/miniconda3 4.8.2 build