https://github.com/alleninstitute/neuron_morphology
Tools for working with single-neuron morphological reconstructions
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
6 of 11 committers (54.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.6%) to scientific vocabulary
Keywords from Contributors
Repository
Tools for working with single-neuron morphological reconstructions
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: other
- Language: Python
- Default Branch: dev
- Homepage: https://neuron-morphology.readthedocs.io/en/latest/
- Size: 1.77 MB
Statistics
- Stars: 21
- Watchers: 12
- Forks: 8
- Open Issues: 39
- Releases: 6
Metadata Files
README.md
neuron_morphology
A package for working with single-neuron morphological reconstruction data, such as those in the Allen Cell Types Database. Provides tools for processing, visualizing, and analyzing such reconstructions.
For usage and installation instructions, see the documentation.
Contributing
We welcome contributions! Please see our contribution guide for more information. Thank you!
Level of Support
We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Watch event: 3
Last Year
- Watch event: 3
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| nile graddis | N****s@g****m | 215 |
| Nika Hejazinia | n****h@a****g | 116 |
| Forrest Collman | f****n@g****m | 90 |
| gnayuy | g****y@g****m | 80 |
| MatthewAitken | m****2@g****m | 75 |
| Nathan Gouwens | n****g@a****g | 73 |
| Keith Godfrey | k****g@a****g | 30 |
| Sergey Gratiy | s****g@a****g | 18 |
| Matt Mallory | m****y@a****g | 11 |
| David Feng | d****f@a****g | 3 |
| emjoyce | e****5@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 75
- Total pull requests: 111
- Average time to close issues: about 2 months
- Average time to close pull requests: 2 days
- Total issue authors: 4
- Total pull request authors: 6
- Average comments per issue: 0.81
- Average comments per pull request: 1.25
- Merged pull requests: 96
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- wbwakeman (30)
- MatthewAitken (6)
- NileGraddis (3)
- sgratiy (1)
Pull Request Authors
- MatthewAitken (24)
- NileGraddis (22)
- gnayuy (6)
- sgratiy (6)
- gouwens (4)
- emjoyce (1)
- nikahk (1)
- MatthewMallory (1)
- josemelchor (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- glymur <1.0.0
- imageio <3.0.0
- jupyter <5.0.0
- matplotlib *
- numpy >=1.14.2
- numpydoc <1.0.0
- pandas *
- pg8000 <2.0.0
- pillow *
- rasterio <2.0.0
- scipy >=1.0.0
- shapely <2.0.0
- six *
- sphinx <3.0.0
- sphinx-autoapi <2.0.0
- rasterio <2.0.0
- allensdk *
- numpy >=1.14.2
- pandas *
- python-dateutil *
- pytz *
- scipy >=1.0.0
- shapely *
- six *
- allensdk *
- argschema ==3.0.0a0
- boto3 >=1.12.42
- glymur <1.0.0
- imageio <3.0.0
- matplotlib *
- numpy >=1.14.2
- pandas *
- pg8000 <2.0.0
- pillow <7.1.0
- scipy >=1.0.0
- shapely <2.0.0
- six *
- codecov * test
- coverage >=3.7.1 test
- dictdiffer <1.0.0 test
- flake8 >=1.5.0 test
- mock >=1.0.1 test
- moto >=1.3.14 test
- numpydoc >=0.6.0 test
- pep8 ==1.7.0 test
- pylint >=1.5.4 test
- pytest >=4.4.0 test
- pytest-cov >=2.6.1 test
- pytest-cover >=3.0.0 test
- pytest-mock >=1.5.0 test
- pytest-pep8 >=1.0.6 test
- pytest-subtests <1.0.0 test
- pytest-xdist >=1.14 test