Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/alleninstitute/dispimdb

https://github.com/alleninstitute/dispimdb

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: Python
  • Default Branch: main
  • Size: 176 KB
Statistics
  • Stars: 1
  • Watchers: 7
  • Forks: 0
  • Open Issues: 3
  • Releases: 2
Created over 4 years ago · Last pushed over 3 years ago
Metadata Files
Readme Contributing License

README.md

DispimDB

DispimDB is a database use to track specimens and imaging acquisitions for projects that use iSPIM (inverted selective plane illumination microscopy). The database software consists of an API, a client for the API, and a web UI for the API.

Level of support

We are not currently supporting this code, but simply releasing it to the community AS IS but are not able to provide any guarantees of support. The community is welcome to submit issues and pull requests, but you should not expect an active response.

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 2
  • Total pull requests: 27
  • Average time to close issues: N/A
  • Average time to close pull requests: 12 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.63
  • Merged pull requests: 24
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • RussTorres (2)
Pull Request Authors
  • RussTorres (25)
  • samrkinn (2)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 25 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 2
  • Total maintainers: 1
pypi.org: ddbclient

A wrapper for API calls to DispimDB

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 25 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 21.6%
Forks count: 29.8%
Stargazers count: 31.9%
Average: 32.4%
Downloads: 68.4%
Maintainers (1)
RussTorres
Last synced: 11 months ago

Dependencies

api/requirements.txt pypi
  • aiofiles *
  • fastapi *
  • gunicorn *
  • numpy *
  • pydantic *
  • pymongo *
  • scipy *
  • uri-handler *
  • uvicorn *
client/requirements.txt pypi
  • imageio *
  • numpy *
  • requests *
  • uri-handler *
setup_requirements.txt pypi
  • setuptools_scm *
test_requirements.txt pypi
  • pytest * test
  • pytest-cov * test
webapp/requirements.txt pypi
  • bokeh *
  • celery *
  • flask *
  • flask_wtf *
  • flower *
  • gunicorn *
  • imageio *
  • matplotlib *
  • numpy *
  • pillow *
  • pymongo *
  • requests *
  • scipy *
  • supervisor *
webapp/test_requirements.txt pypi
  • pytest * test
  • pytest-cov * test
.github/workflows/client_release_publish.yml actions
  • actions/checkout v2 composite
  • pypa/gh-action-pypi-publish release/v1 composite
.github/workflows/test.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • supercharge/mongodb-github-action 1.6.0 composite
api/Dockerfile docker
  • ubuntu 20.04 build
docker-compose.yml docker
  • mongo latest
webapp/Dockerfile docker
  • python 3.7 build
api/setup.py pypi
client/setup.py pypi