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https://github.com/alleninstitute/visual_behavior_glm_np

GLM for NP data during visual behavior

https://github.com/alleninstitute/visual_behavior_glm_np

Science Score: 13.0%

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Last synced: 10 months ago · JSON representation

Repository

GLM for NP data during visual behavior

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: Python
  • Default Branch: master
  • Size: 115 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 12
  • Releases: 0
Created about 3 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.md

visualbehaviorglm

Fits a kernel regression model to neural traces during visual behavior.

Installing and setting up the package

Set up an environment

Before installing, it's recommended to set up a new Python environment with Python 3.7:

For example, using Conda:

conda create -n visual_behavior_glm python=3.7.9

Then activate the environment:

conda activate visual_behavior_glm

Installation

To facilitate development, it is recommended to set up the package in 'editable' mode:

git clone https://github.com/AllenInstitute/visual_behavior_glm.git
cd visual_behavior_glm
pip install -e .

An additional dependency of the package is visual_behavior_analysis (VBA)
Assuming that most users of this package will also be contributing to VBA, it should also be installed in 'editable' mode:

git clone https://github.com/AllenInstitute/visual_behavior_analysis.git
cd visual_behavior_analysis
pip install -e .

Alternatively, the current master branch could be installed with:

pip install git+https://github.com/AllenInstitute/visual_behavior_analysis.git

Test that the package was installed properly by importing the GLM class from outside of the visualbehaviorglm directory:

cd ~
python
>>> from visual_behavior_glm.glm import GLM

Please report issues at https://github.com/AllenInstitute/visualbehaviorglm/issues

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

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Last synced: about 1 year ago

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  • Total issues: 67
  • Total pull requests: 41
  • Average time to close issues: 17 days
  • Average time to close pull requests: about 8 hours
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.79
  • Average comments per pull request: 0.15
  • Merged pull requests: 41
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
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  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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  • alexpiet (41)
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