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micrometaexplorer

Micro-Meta Explorer is used to compare and explore different Micro-Meta App generated microscope hardware JSON files

https://github.com/wu-bimac/micrometaexplorer

Science Score: 54.0%

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
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  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary
Last synced: 7 months ago · JSON representation ·

Repository

Micro-Meta Explorer is used to compare and explore different Micro-Meta App generated microscope hardware JSON files

Basic Info
  • Host: GitHub
  • Owner: WU-BIMAC
  • License: gpl-3.0
  • Language: JavaScript
  • Default Branch: master
  • Homepage:
  • Size: 24.7 MB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 0
  • Open Issues: 12
  • Releases: 0
Created about 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme Contributing License Code of conduct Citation

README.md

MicroMetaExplorer

MicroMetaExplorer is a key component of the Micro-Meta project, designed to facilitate the comparison and exploration of Microscope-Hardware JSON files generated by the Micro-Meta App. This tool provides an intuitive interface to visualize and analyze microscope hardware configurations in a tabular format, enabling users to filter, compare, and identify microscopes with specific characteristics.

Features

  • Explore Microscope-Hardware JSON Files: Load and explore JSON files stored in the Home folder, which contains detailed hardware configurations of microscopes.
  • Filter by Hardware Characteristics: Easily filter microscopes based on specific hardware attributes (e.g., find all microscopes equipped with a 100x Objective).
  • Compare Microscopes Side-by-Side: Select multiple microscopes to compare their hardware configurations in a detailed, side-by-side view.
  • Identify Desired Configurations: Quickly identify microscopes that meet your specific microscopy requirements.

How It Works

  1. Load JSON Files: MicroMetaExplorer scans the Home folder for Microscope-Hardware JSON files generated by the Micro-Meta App.
  2. Filter and Explore: Use the filtering options to narrow down the list of microscopes based on specific hardware characteristics.
  3. Compare Configurations: Select microscopes of interest to compare their hardware configurations in a tabular format.
  4. Launch Micro-Meta App: Launch the Micro-Meta App viewer to visualize and edit the identified Microscope-Hardware file.


Contributing

We welcome contributions to the MicroMetaExplorer project! Please follow the CONTRIBUTING guidelines if you'd like to contribute.

License

This project is licensed under the GNU General Public License v3.0. See the LICENSE file for more details.

Acknowledgments

MicroMetaExplorer is developed as part of the Micro-Meta project by the Strambio-De-Castillia Lab team. We thank all contributors and users for their support and feedback.

Owner

  • Name: Worcester Image Data Management
  • Login: WU-BIMAC
  • Kind: organization
  • Email: worcesterimagedatamanagement@gmail.com
  • Location: University of Massachusetts Medical School, Worcester, MA

The UMass Chan Medical School Research Data Management 4 Microscopy Image Data Group

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Micro-Meta App Explorer - React implementation
message: >-
  If you use this software please cite both the software using the metadata indicated below, and the papers as indicated in the scope of each reference
type: software
authors:
  - given-names: Alessandro
    family-names: Rigano
    email: alessandro.rigano@umassmed.edu
    affiliation: >-
      Program in Molecular Medicine, UMass Chan
      Medical School, Worcester MA 01605, USA  
  - given-names: Shannon
    family-names: Ehmsen
    affiliation: >-
      Department of Biomedical Informatics, Harvard
      Medical School, Boston, MA 02115, USA   
  - given-names: Caterina
    family-names: Strambio-De-Castillia
    email: caterina.strambio@umassmed.edu
    affiliation: >-
      Program in Molecular Medicine, UMass Chan
      Medical School, Worcester MA 01605, USA
    orcid: >-
      https://orcid.org/https://orcid.org/0000-0002-1069-1816  
repository-code: "https://github.com/WU-BIMAC/MicroMetaExplorer"
url:
doi:
repository-artifact: >-
abstract: >-
Micro-Meta Explorer is a component of the Micro-Meta project that is used to compare and explore different Micro-Meta App generated Microscope-Hardware JSON files and display results in a tabular format.
Micro-Meta App (https://wu-bimac.github.io/MicroMetaApp.github.io/) is an intuitive Graphical User Interface (GUI)-based open-source software that helps scientists to interactively build graphical representations of microscope hardware by dragging-and-dropping individual components onto the workspace and entering the relevant attribute values based on the NBO-Q Microscopy Metadata specifications (https://github.com/WU-BIMAC/NBOMicroscopyMetadataSpecs) that scale with experimental complexity. 
Micro-Meta App automatically generates structured Microscope-Hardware JSON files that can be saved locally, consumed by existing data portals, shared with other scientists, and used repeatedly whenever the same microscope is used to produce image data. From these, Micro-Meta App imports the relevant metadata, combines it with OME Image Metadata that is found in the header of image data files, and interactively guides the user through the steps required to generate a image Acquisition-Settings JSON file. The Microscope-Hardware and Acquisition-Settings, in combination contain comprehensive descriptions of the conditions utilized to produce individual microscopy datasets.
keywords:
  - metadata
  - microscopy
  - standards
  - data model
  - OME
  - open science
  - reproducibility
  - quality control
  - data provenance
license: GPL-3.0-or-later
version: 
date-released:
references:
  - authors:
      - family-names: Rigano
        given-names: Alessandro
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
        email: alex.rigano@umassmed.edu
      - family-names: Ehmsen
        given-names: Shannon
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Ozturk
        given-names: Serkan Utku
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
        orcid: https://orcid.org/0000-0001-8835-787
      - family-names: Ryan
        given-names: Joel
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
      - family-names: Balashov
        given-names: Alexander
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Hammer
        given-names: Mathias
        affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Kirli
        given-names: Koray
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Boehm
        given-names: Ulrike
        affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
        orcid: https://orcid.org/0000-0001-7471-2244
      - family-names: Brown
        given-names: Claire M.
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
        orcid: https://orcid.org/0000-0003-1622-663X
      - family-names: Bellve
        given-names: Karl
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Chambers
        given-names: James
        affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
        orcid: https://orcid.org/0000-0003-3883-8215
      - family-names: Cosolo
        given-names: Andrea
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Coleman
        given-names: Robert
        affiliation: Gruss-Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461
      - family-names: Faklaris
        given-names: Orestis
        affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
        orcid: https://orcid.org/0000-0001-5965-5405
      - family-names: Fogarty
        given-names: Kevin
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Guilbert
        given-names: Thomas
        affiliation: Plateforme IMAG'IC, Institut Cochin, Inserm U1016-CNRS UMR8104-Université de Paris, 75014 Paris
      - family-names: Hamacher
        given-names: Anna B.
        affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
      - family-names: Itano
        given-names: Michelle
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Keeley
        given-names: Daniel P.
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Kunis
        given-names: Susanne
        affiliation: Department of Biology/Chemistry and Centre for Cellular Nanoanalytics, University Osnabrueck, 49076 Osnabrück, Germany
      - family-names: Lacoste
        given-names: Judith
        affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
      - family-names: Laude
        given-names: Alex
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: https://orcid.org/0000-0002-3853-1187
      - family-names: Ma
        given-names: Willa Y.
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Marcello
        given-names: Marco
        affiliation: Center for Cell Imaging, University of Liverpool, Liverpool, L69 3BE, UK
      - family-names: Montero-Llopis
        given-names: Paula
        affiliation: Microscopy Resources of the North Quad, University of Harvard Medical School, Boston, MA 02115
        orcid: https://orcid.org/0000-0002-5983-2296
      - family-names: Nelson
        given-names: Glyn
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: http://orcid.org/0000-0002-1895-4772
      - family-names: Nitschke
        given-names: Roland
        affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
        orcid: https://orcid.org/0000-0002-9397-8475
      - family-names: Pimentel
        given-names: Jaime A.
        affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
        orcid: https://orcid.org/0000-0001-8569-0466
      - family-names: Weidtkamp-Peters
        given-names: Stefanie
        affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
      - family-names: Park
        given-names: Peter
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Alver
        given-names: Burak
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
        orcid: https://orcid.org/https://orcid.org/0000-0002-5019-7652
      - family-names: Grunwald
        given-names: David
        affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Strambio-De-Castillia
        given-names: Caterina
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
        email: caterina.strambio@umassmed.edu
        orcid: https://orcid.org/0000-0002-1069-1816
    doi: 10.1038/s41592-021-01315-z
    journal: "Nature Methods"
    volume: 18
    pages: 1489
    scope: "Cite this paper every time you use this software."
    title: "Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications"
    type: article
    year: 2021
  - authors:
      - family-names: Rigano
        given-names: Alessandro
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
        email: alex.rigano@umassmed.edu
      - family-names: Ehmsen
        given-names: Shannon
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Ozturk
        given-names: Serkan Utku
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
        orcid: https://orcid.org/0000-0001-8835-787
      - family-names: Ryan
        given-names: Joel
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
      - family-names: Balashov
        given-names: Alexander
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Hammer
        given-names: Mathias
        affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Kirli
        given-names: Koray
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Boehm
        given-names: Ulrike
        affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
        orcid: https://orcid.org/0000-0001-7471-2244
      - family-names: Brown
        given-names: Claire M.
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
        orcid: https://orcid.org/0000-0003-1622-663X
      - family-names: Chambers
        given-names: James
        affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
        orcid: https://orcid.org/0000-0003-3883-8215
      - family-names: Coleman
        given-names: Robert
        affiliation: Gruss-Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461
      - family-names: Cosolo
        given-names: Andrea
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Faklaris
        given-names: Orestis
        affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
        orcid: https://orcid.org/0000-0001-5965-5405
      - family-names: Fogarty
        given-names: Kevin
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Guilbert
        given-names: Thomas
        affiliation: Plateforme IMAG'IC, Institut Cochin, Inserm U1016-CNRS UMR8104-Université de Paris, 75014 Paris
      - family-names: Hamacher
        given-names: Anna B.
        affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
      - family-names: Itano
        given-names: Michelle
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Keeley
        given-names: Daniel P.
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Kunis
        given-names: Susanne
        affiliation: Department of Biology/Chemistry and Centre for Cellular Nanoanalytics, University Osnabrueck, 49076 Osnabrück, Germany
      - family-names: Lacoste
        given-names: Judith
        affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
      - family-names: Laude
        given-names: Alex
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: https://orcid.org/0000-0002-3853-1187
      - family-names: Ma
        given-names: Willa
        affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
      - family-names: Marcello
        given-names: Marco
        affiliation: Center for Cell Imaging, University of Liverpool, Liverpool, L69 3BE, UK
      - family-names: Montero-Llopis
        given-names: Paula
        affiliation: Microscopy Resources of the North Quad, University of Harvard Medical School, Boston, MA 02115
        orcid: https://orcid.org/0000-0002-5983-2296
      - family-names: Nelson
        given-names: Glyn
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: http://orcid.org/0000-0002-1895-4772
      - family-names: Nitschke
        given-names: Roland
        affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
        orcid: https://orcid.org/0000-0002-9397-8475
      - family-names: Pimentel
        given-names: Jaime A.
        affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
        orcid: https://orcid.org/0000-0001-8569-0466
      - family-names: Weidtkamp-Peters
        given-names: Stefanie
        affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
      - family-names: Park
        given-names: Peter
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
      - family-names: Alver
        given-names: Burak
        affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
        orcid: https://orcid.org/https://orcid.org/0000-0002-5019-7652
      - family-names: Grunwald
        given-names: David
        affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
      - family-names: Strambio-De-Castillia
        given-names: Caterina
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
        email: caterina.strambio@umassmed.edu
        orcid: https://orcid.org/0000-0002-1069-1816
    doi: 10.1101/2021.05.31.44638
    journal: "BioRxiv.org"
    scope: "Cite this paper every time you use this software."
    title: "Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications"
    type: article
    year: 2021 
  - authors:
      - family-names: Maximiliaan
        given-names: Huisman
        affiliation: University of Massachusetts Medical School
      - family-names: Mathias
        given-names: Hammer
        affiliation: University of Massachusetts Medical School
        orcid: https://orcid.org/0000-0003-3363-8791
      - family-names: Rigano
        given-names: Alessandro
        affiliation: University of Massachusetts Medical School
      - family-names: Boehm
        given-names: Ulrike
        affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
        orcid: https://orcid.org/0000-0001-7471-2244
      - family-names: Chambers
        given-names: James
        affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
        orcid: https://orcid.org/0000-0003-3883-8215
      - family-names: Gaudreault
        given-names: Nathalie
        affiliation: Allen Institute for Cell Science, Seattle, WA 98109, USA
      - family-names: North
        given-names: Alison J.
        affiliation: The Rockefeller University, New York, NY 10065, USA
        orcid: https://orcid.org/0000-0002-0577-7949
      - family-names: Pimentel
        given-names: Arturo
        affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
        orcid: https://orcid.org/0000-0001-8569-0466
      - family-names: Sudar
        given-names: Damir
        affiliation: Quantitative Imaging Systems LLC, Portland, OR 97209, USA
        orcid: https://orcid.org/0000-0002-2510-7272
      - family-names: Bajcsy
        given-names: Peter
        affiliation: National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
        orcid: https://orcid.org/0000-0002-6968-2615
      - family-names: Brown
        given-names: Claire M.
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
        orcid: https://orcid.org/0000-0003-1622-663X
      - family-names: Corbett
        given-names: Alexander D.
        affiliation: Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
        orcid: https://orcid.org/0000-0003-1645-5475
      - family-names: Faklaris
        given-names: Orestis
        affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
        orcid: https://orcid.org/0000-0001-5965-5405
      - family-names: Lacoste
        given-names: Judith
        affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
      - family-names: Laude
        given-names: Alex
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: https://orcid.org/0000-0002-3853-1187
      - family-names: Nelson
        given-names: Glyn
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: http://orcid.org/0000-0002-1895-4772
      - family-names: Nitschke
        given-names: Roland
        affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
        orcid: https://orcid.org/0000-0002-9397-8475
      - family-names: David
        given-names: Grunwald
        affiliation: University of Massachusetts Medical School
      - family-names: Strambio-De-Castillia
        given-names: Caterina
        affiliation: University of Massachusetts Medical School
        email: caterina.strambio@umassmed.edu
        orcid: https://orcid.org/0000-0002-1069-1816
    url: https://arxiv.org/abs/1910.11370
    journal: "arXiv.org"
    scope: "Cite this paper when you want to discuss the background context for this software."
    title: "A perspective on Microscopy Metadata: data provenance and quality control"
    type: article
    year: 2021
  - authors:
      - family-names: Mathias
        given-names: Hammer
        affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
      - family-names: Maximiliaan
        given-names: Huisman
        affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
        orcid: https://orcid.org/0000-0003-3363-8791
      - family-names: Rigano
        given-names: Alessandro
        affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School
      - family-names: Boehm
        given-names: Ulrike
        affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
        orcid: https://orcid.org/0000-0001-7471-2244
      - family-names: Chambers
        given-names: James
        affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
        orcid: https://orcid.org/0000-0003-3883-8215
      - family-names: Gaudreault
        given-names: Nathalie
        affiliation: Allen Institute for Cell Science, Seattle, WA 98109, USA
      - family-names: North
        given-names: Alison J.
        affiliation: The Rockefeller University, New York, NY 10065, USA
        orcid: https://orcid.org/0000-0002-0577-7949
      - family-names: Pimentel
        given-names: Arturo
        affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
        orcid: https://orcid.org/0000-0001-8569-0466
      - family-names: Sudar
        given-names: Damir
        affiliation: Quantitative Imaging Systems LLC, Portland, OR 97209, USA
        orcid: https://orcid.org/0000-0002-2510-7272
      - family-names: Bajcsy
        given-names: Peter
        affiliation: National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
        orcid: https://orcid.org/0000-0002-6968-2615
      - family-names: Brown
        given-names: Claire M.
        affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
        orcid: https://orcid.org/0000-0003-1622-663X
      - family-names: Corbett
        given-names: Alexander D.
        affiliation: Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
        orcid: https://orcid.org/0000-0003-1645-5475
      - family-names: Faklaris
        given-names: Orestis
        affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
        orcid: https://orcid.org/0000-0001-5965-5405
      - family-names: Lacoste
        given-names: Judith
        affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
      - family-names: Laude
        given-names: Alex
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: https://orcid.org/0000-0002-3853-1187
      - family-names: Nelson
        given-names: Glyn
        affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
        orcid: http://orcid.org/0000-0002-1895-4772
      - family-names: Nitschke
        given-names: Roland
        affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
        orcid: https://orcid.org/0000-0002-9397-8475
      - family-names: Gopinathan
        given-names: Renu
        affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
      - family-names: Farzam
        given-names: Farzin
        affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
      - family-names: Carlas
        given-names: Smith
        affiliation: Dutch Optics Center, Technische Universiteit Delft, Delft, 2600 AA, The Netherlands
      - family-names: David
        given-names: Grunwald
        affiliation: University of Massachusetts Medical School
      - family-names: Strambio-De-Castillia
        given-names: Caterina
        affiliation: University of Massachusetts Medical School
        email: caterina.strambio@umassmed.edu
        orcid: https://orcid.org/0000-0002-1069-1816
    doi: 10.1038/s41592-021-01327-9
    journal: "Nature Methods"
    volume: 18
    pages: 1428
    scope: "Cite this paper when you want to discuss the background context for this software."
    title: "Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model"
    type: article
    year: 2021

GitHub Events

Total
  • Issues event: 6
  • Issue comment event: 4
  • Push event: 8
Last Year
  • Issues event: 6
  • Issue comment event: 4
  • Push event: 8

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 74
  • Total Committers: 2
  • Avg Commits per committer: 37.0
  • Development Distribution Score (DDS): 0.135
Past Year
  • Commits: 10
  • Committers: 1
  • Avg Commits per committer: 10.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
akramhar a****3@r****h 64
Caterina Strambio De Castillia c****o@u****u 10
Committer Domains (Top 20 + Academic)
umassmed.edu: 1 rigano.ch: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 27
  • Total pull requests: 0
  • Average time to close issues: 3 months
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 1.56
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • strambc (23)
  • Akramhar (1)
Pull Request Authors
Top Labels
Issue Labels
bug (14) High (12) GUI changes (7) enhancement (5) question (3) Medium (1)
Pull Request Labels

Dependencies

package-lock.json npm
  • 1153 dependencies
package.json npm
  • @babel/cli ^7.17.0 development
  • @babel/core ^7.17.2 development
  • @babel/eslint-parser 7.17.0 development
  • @babel/plugin-proposal-class-properties ^7.16.7 development
  • @babel/plugin-proposal-object-rest-spread ^7.16.7 development
  • @babel/plugin-syntax-dynamic-import ^7.8.3 development
  • @babel/plugin-syntax-flow ^7.16.7 development
  • @babel/preset-env ^7.16.11 development
  • @babel/preset-react ^7.16.7 development
  • @babel/register ^7.17.0 development
  • @swc/core ^1.2.140 development
  • @swc/wasm ^1.2.140 development
  • babel-loader ^8.2.3 development
  • bufferutil ^4.0.6 development
  • case-sensitive-paths-webpack-plugin ^2.3.0 development
  • css-loader ^6.6.0 development
  • encoding ^0.1.13 development
  • eslint ^8.9.0 development
  • eslint-plugin-flowtype ^8.0.3 development
  • eslint-plugin-import ^2.25.4 development
  • eslint-plugin-jsx-a11y ^6.5.1 development
  • eslint-plugin-react ^7.28.0 development
  • eslint-webpack-plugin ^3.1.1 development
  • fancy-log ^2.0.0 development
  • gulp ^4.0.2 development
  • jest ^28.1.3 development
  • jest-pnp-resolver ^1.2.2 development
  • jest-resolve ^28.1.3 development
  • jest-watch-typeahead ^1.0.0 development
  • less ^4.1.2 development
  • less-loader ^10.2.0 development
  • node-notifier ^10.0.1 development
  • plugin-error ^1.0.1 development
  • react ^17.0.2 development
  • react-dom ^17.0.2 development
  • source-map-support ^0.5.19 development
  • string-replace-loader ^3.1.0 development
  • style-loader ^3.3.1 development
  • terser-webpack-plugin ^5.3.5 development
  • ts-node ^10.5.0 development
  • utf-8-validate ^5.0.8 development
  • webpack ^5.74.0 development
  • webpack-cli ^4.10.0 development
  • @material-ui/core ^4.12.4
  • @material-ui/icons ^4.11.3
  • @material-ui/styles ^4.11.5
  • @rjsf/bootstrap-4 4.2.3
  • @rjsf/core 4.2.3
  • bfj 7.0.2
  • file-loader ^6.2.0
  • identity-obj-proxy ^3.0.0
  • jquery ^3.6.0
  • jsonschema ^1.4.0
  • lodash ^4.17.21
  • material-table ^2.0.3
  • react-app-polyfill ^3.0.0
  • react-archer 3.3.0
  • react-bootstrap 1.4.0
  • react-bootstrap-typeahead ^6.1.1
  • react-collapsible 2.8.4
  • react-drag-drop-container 6.1.1
  • react-dropzone 11.3.1
  • react-resizable 1.11.1
  • react-simple-tree-menu 1.1.18
  • react-tabs 3.2.1
  • reactstrap 8.9.0
  • resolve ^1.20.0
  • typescript ^4.8.2
  • url ^0.11.0
  • url-loader ^4.1.1
  • uuid ^8.3.2