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Open Source Science

https://github.com/alpha-unito/jupyter-workflow

Distributed workflows design and execution with Jupyter Notebooks.

https://github.com/alpha-unito/jupyter-workflow

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.6%) to scientific vocabulary

Keywords

jupyter workflows
Last synced: 5 months ago · JSON representation

Repository

Distributed workflows design and execution with Jupyter Notebooks.

Basic Info
Statistics
  • Stars: 14
  • Watchers: 7
  • Forks: 1
  • Open Issues: 4
  • Releases: 5
Topics
jupyter workflows
Created about 5 years ago · Last pushed 6 months ago
Metadata Files
Readme License

README.md

CI Tests coverage

Jupyter Workflow

The Jupyter Workflow framework enables Jupyter Notebooks to describe complex workflows and to execute them in a distributed fashion on hybrid HPC-Cloud infrastructures. Jupyter Workflow relies on the StreamFlow WMS as its underlying runtime support.

Install Jupyter Workflow

The Jupyter Workflow IPython kernel is available on PyPI, so you can install it using pip.

bash pip install jupyter-workflow

Then, you can install it on a Jupyter Notebook server by running the following command.

bash python -m jupyter_workflow.ipython.install

Please note that Jupyter Workflow requires python >= 3.9. Then you can associate your Jupyter Notebooks with the newly installed kernel. Some examples can be found under the examples folder in the GitHub repository.

Jupyter Workflow Team

Iacopo Colonnelli iacopo.colonnelli@unito.it (creator and maintainer) Alberto Mulone alberto.mulone@unito.it (maintainer) Sergio Rabellino sergio.rabellino@unito.it (maintainer)
Barbara Cantalupo barbara.cantalupo@unito.it (maintainer)
Marco Aldinucci aldinuc@di.unito.it (maintainer)

Owner

  • Name: Parallel programming: Alpha group
  • Login: alpha-unito
  • Kind: organization
  • Location: Torino, IT

Parallel Computing research cluster, Department of Computer Science, University of Torino

GitHub Events

Total
  • Release event: 3
  • Watch event: 5
  • Delete event: 58
  • Issue comment event: 59
  • Push event: 137
  • Pull request review comment event: 3
  • Pull request review event: 7
  • Pull request event: 99
  • Create event: 51
Last Year
  • Release event: 3
  • Watch event: 5
  • Delete event: 58
  • Issue comment event: 59
  • Push event: 137
  • Pull request review comment event: 3
  • Pull request review event: 7
  • Pull request event: 99
  • Create event: 51

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 74
  • Total Committers: 1
  • Avg Commits per committer: 74.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
GlassOfWhiskey i****2@g****m 74

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 261
  • Average time to close issues: 19 days
  • Average time to close pull requests: 30 days
  • Total issue authors: 1
  • Total pull request authors: 3
  • Average comments per issue: 2.0
  • Average comments per pull request: 1.13
  • Merged pull requests: 171
  • Bot issues: 1
  • Bot pull requests: 242
Past Year
  • Issues: 0
  • Pull requests: 115
  • Average time to close issues: N/A
  • Average time to close pull requests: 10 days
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 1.03
  • Merged pull requests: 88
  • Bot issues: 0
  • Bot pull requests: 105
View more stats
Top Authors
Issue Authors
  • dependabot[bot] (1)
Pull Request Authors
  • dependabot[bot] (242)
  • GlassOfWhiskey (17)
  • Giubb8 (2)
Top Labels
Issue Labels
dependencies (1) python (1)
Pull Request Labels
dependencies (242) python (217) github_actions (25)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 146 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 42
  • Total maintainers: 1
pypi.org: jupyter-workflow

Jupyter Workflow Kernel

  • Versions: 42
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 146 Last month
Rankings
Dependent packages count: 10.1%
Downloads: 19.0%
Stargazers count: 19.3%
Average: 20.0%
Dependent repos count: 21.6%
Forks count: 29.8%
Maintainers (1)
glassofwhiskey
Last synced: 6 months ago

Dependencies

.github/workflows/ci-tests.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • actions/setup-node v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • codecov/codecov-action v3 composite
  • docker/setup-qemu-action v2 composite
  • github/codeql-action/analyze v2 composite
  • github/codeql-action/init v2 composite
.github/workflows/release.yml actions
  • actions/checkout v3 composite
  • actions/create-release v1 composite
  • actions/setup-python v4 composite
  • mukunku/tag-exists-action v1.4.0 composite
  • pypa/gh-action-pypi-publish release/v1 composite
examples/1000-genome/docker/1000-genome/Dockerfile docker
  • python 3.9-slim build
examples/1000-genome/docker/1000-genome-notebook/Dockerfile docker
  • jupyter/minimal-notebook latest build
examples/claire-covid/docker/Dockerfile docker
  • jupyter/scipy-notebook latest build
examples/quantum-espresso/docker/Dockerfile docker
  • jupyter/minimal-notebook latest build
examples/tensorflow/docker/tensorflow-notebook/Dockerfile docker
  • jupyter/scipy-notebook latest build
examples/tensorflow/docker/tensorflow-serving/Dockerfile docker
  • tensorflow/serving latest build
bandit-requirements.txt pypi
  • bandit ==1.7.5
docs/requirements.txt pypi
  • sphinx ==7.2.4
  • sphinx-jsonschema ==1.19.1
  • sphinx-rtd-theme ==1.2.2
lint-requirements.txt pypi
  • black ==23.7.0
  • codespell ==2.2.5
  • flake8-bugbear ==23.7.10
  • pyupgrade ==3.10.1
pyproject.toml pypi
requirements.txt pypi
  • cloudpickle ==2.2.1
  • ipykernel ==6.25.1
  • ipython_genutils ==0.2.0
  • jsonref ==1.1.0
  • jupyter_client ==8.3.0
  • nbclient ==0.8.0
  • nbformat ==5.9.2
  • streamflow ==0.2.0.dev7
  • traitlets ==5.9.0
test-requirements.txt pypi
  • coverage ==7.3.1 test
  • pytest ==7.4.0 test
  • pytest-asyncio ==0.21.1 test
  • pytest-xdist ==3.3.1 test
  • testbook ==0.4.2 test