https://github.com/althonos/nafcodec - v0.3.1

nafcodec-py

Fixed

• build.rs file for nafcodec-py failing to build on missing Cargo.lock.
• Deployment to AUR using the wrong GitHub Actions environment.

- Rust
Published by github-actions[bot] over 1 year ago

https://github.com/althonos/nafcodec - v0.3.0

nafcodec

Changed

• Update nom to v8.0.

Fixed

• Encoder::push potentially recording length twice when given both sequence and quality string.
• SequenceWriter::write not correctly reporting the number of bytes written for a sequence (#3).

nafcodec-py

Changed

• Update pyo3 to v0.23.
• Drop compilation of tempfile in nafcodec-py wrapper.
• Make fields of Record struct copy-on-write.
• Avoid copying data from Python heap in Encoder.
• Use maturin instead of setuptools-rust to build the Python wheels.

Fixed

• Use std::os::raw::c_char to fix Aarch64 build (#2).

- Rust
Published by github-actions[bot] over 1 year ago

https://github.com/althonos/nafcodec - v0.2.0

nafcodec

Added

• Encoder to write a Nucleotide Archive Format file using generic temporary storage.
• Flag enum to simplify creation and manipulation of Flags objects without u8 arithmetics.
• Builder types for Encoder and Decoder creation with different configurations.
• ExactSizeDecoder trait implementation to Decoder.
• Error variants to return on missing fields and invalid sequence characters.

Changed

• Use iterators internally inside reader code.
• Bumped pyo3 dependency to v0.21.1.
• Bumped zstd dependency to v0.13.1.

Fixed

• Decoding of record lengths when quality field is requested without sequence.
• Compilation issue on 32-bit platforms in parser code.

nafcodec-py

Added

• Support for file-like objects in Decoder.
• Proper error conversion for seek failures.
• Decoder.sequence_type property to get the type of sequence being decoded.
• Constructor for Record objects.
• Decoder properties to access decoded header data.
• Decoder.__len__ implementation using number of sequences in archive.
• Encoder class to support encoding Record objects into an archive.
• nafcodec.open function to get a decoder or encoder based on literal mode.
• Context manager protocol implementation to Decoder objects.

Changed

• Use readinto method of file-like objects given to Decoder if available.

- Rust
Published by github-actions[bot] about 2 years ago

https://github.com/althonos/nafcodec - v0.1.1

Added

• nafcodec-py crate with PyO3 bindings.

- Rust
Published by github-actions[bot] over 2 years ago