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https://github.com/althonos/botrytis

A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap

https://github.com/althonos/botrytis

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: ncbi.nlm.nih.gov
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.9%) to scientific vocabulary

Keywords

bioinformatics bootstrap cherrypy genomics genomics-visualization jinja2

Keywords from Contributors

open-science filesystem gtk2 gtk3 libtorrent thunar thunarx torrent hack bruteforce
Last synced: 5 months ago · JSON representation

Repository

A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap

Basic Info
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
bioinformatics bootstrap cherrypy genomics genomics-visualization jinja2
Created over 7 years ago · Last pushed about 6 years ago
Metadata Files
Readme License

README.md

The Botrytis Viewer

A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap

Source Docker

Usage

Clone the repository and download frontend requirements using: console $ python setup.py build_js

Then serve the website with: console $ python setup.py run

Dependencies

BLAST+ binaries are required to run blasts against the Botrytis cinerea genome.

The Botrytis Viewer is built with CherryPy and Jinja2 (backend) and Bootstrap (frontend).

About

This pipeline was developed by Martin Larralde for the web programming course of the AMI2B Master's degree of Université Paris-Sud.

Owner

  • Name: Martin Larralde
  • Login: althonos
  • Kind: user
  • Location: Heidelberg, Germany
  • Company: EMBL / LUMC, @zellerlab

PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 65
  • Total Committers: 3
  • Avg Commits per committer: 21.667
  • Development Distribution Score (DDS): 0.031
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Martin Larralde m****e@e****r 63
ImgBotApp I****p@g****m 1
Martin Larralde m****e@e****r 1
Committer Domains (Top 20 + Academic)
ens-paris-saclay.fr: 1 ens-cachan.fr: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 1
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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  • imgbot[bot] (1)
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