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MembraneAnalysis.jl

MembraneAnalysis.jl: A Julia package for analyzing molecular dynamics simulations of lipid membranes - Published in JOSS (2023)

https://github.com/amiralih/membraneanalysis.jl

Science Score: 100.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 6 months ago · JSON representation ·

Repository

A package for analyzing molecular dynamics simulations of lipid membranes

Basic Info
  • Host: GitHub
  • Owner: amiralih
  • License: mit
  • Language: Julia
  • Default Branch: main
  • Size: 3.23 MB
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 5
Created over 3 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

MembraneAnalysis.jl

A package for analyzing molecular dynamics simulations of lipid membranes

DOI

Installation

MembraneAnalysis.jl can be installed using the Julia package manager. From the Julia REPL, type ] to enter the Pkg REPL mode and run

julia pkg> add MembraneAnalysis

Tutorial

A tutorial demonstrating an example usage of the package can be found here.

Contribution

User feedback is appreciated. Please create a GitHub Issue to report bugs or suggest new features, or a Pull Request to contribute to the package.

Owner

  • Name: Amirali
  • Login: amiralih
  • Kind: user

JOSS Publication

MembraneAnalysis.jl: A Julia package for analyzing molecular dynamics simulations of lipid membranes
Published
July 06, 2023
DOI
Volume 8, Issue 87, Page 5380
Authors
Amirali Hossein ORCID
Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, United States of America
Alexander J. Sodt ORCID
Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, United States of America
Editor
Mark A. Jensen ORCID
Tags
biophysics molecular dynamics lipid membranes
View PDF Review Thread Software Archive

Citation (CITATION.cff) 

cff-version: "1.2.0"
authors:
- family-names: Hossein
  given-names: Amirali
  orcid: "https://orcid.org/0000-0002-2580-3577"
- family-names: Sodt
  given-names: Alexander J.
  orcid: "https://orcid.org/0000-0002-5570-8212"
doi: 10.5281/zenodo.8084178
message: If you use this software, please cite our article in the
  Journal of Open Source Software.
preferred-citation:
  authors:
  - family-names: Hossein
    given-names: Amirali
    orcid: "https://orcid.org/0000-0002-2580-3577"
  - family-names: Sodt
    given-names: Alexander J.
    orcid: "https://orcid.org/0000-0002-5570-8212"
  date-published: 2023-07-06
  doi: 10.21105/joss.05380
  issn: 2475-9066
  issue: 87
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 5380
  title: "MembraneAnalysis.jl: A Julia package for analyzing molecular
    dynamics simulations of lipid membranes"
  type: article
  url: "https://joss.theoj.org/papers/10.21105/joss.05380"
  volume: 8
title: "MembraneAnalysis.jl: A Julia package for analyzing molecular
  dynamics simulations of lipid membranes"

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 132
  • Total Committers: 4
  • Avg Commits per committer: 33.0
  • Development Distribution Score (DDS): 0.326
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Amirali a****h 89
Amirali Hossein h****2@r****v 41
Leandro Martínez 3****q 1
Alex Sodt 3****t 1
Committer Domains (Top 20 + Academic)
randall.nichd.nih.gov: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 1
  • Average time to close issues: less than a minute
  • Average time to close pull requests: 15 minutes
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 5.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • JuliaTagBot (1)
Pull Request Authors
  • lmiq (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • julia 2 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
juliahub.com: MembraneAnalysis

A package for analyzing molecular dynamics simulations of lipid membranes

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 2 Total
Rankings
Dependent repos count: 9.9%
Average: 24.4%
Dependent packages count: 38.9%
Last synced: 6 months ago

Dependencies

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