https://github.com/ammar257ammar/biojava-tutorial
:book::books:An introductory tutorial for BioJava
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:book::books:An introductory tutorial for BioJava
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- Host: GitHub
- Owner: ammar257ammar
- License: other
- Default Branch: master
- Homepage: http://www.biojava.org
- Size: 4.99 MB
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Created over 6 years ago
· Last pushed about 7 years ago
https://github.com/ammar257ammar/biojava-tutorial/blob/master/
Tutorial === A brief introduction into [BioJava](https://www.biojava.org). ----- The goal of this tutorial is to provide an educational introduction into some of the features that are provided by BioJava. This tutorial is still under development, hence not yet comprehensive for the entire library. Please also check other sources of [documentation](https://biojava.org/wiki/Documentation). The examples within the tutorial are intended to work with the most recent version of BioJava, although most examples will work with BioJava 3.0 and higher. Please do submit a [new issue](https://github.com/biojava/biojava-tutorial/issues) if you find any problems. The tutorial is subdivided into several books, corresponding to the respective BioJava modules. Each book is further subdivided into several chapters that intend to describe the main functionality of the module in order of increasing complexity. ## Index [Quick Installation](installation.md) Book 1: [The Core Module](core/README.md), basic working with sequences. Book 2: [The Alignment Module](alignment/README.md), pairwise and multiple alignments of protein sequences. Book 3: [The Structure Modules](structure/README.md), everything related to working with 3D structures. Book 4: [The Genomics Module](genomics/README.md), working with genomic data. Book 5: [The Protein-Disorder Module](protein-disorder/README.md), predicting protein-disorder. Book 6: [The ModFinder Module](modfinder/README.md), identifying potein modifications in 3D structures ## License The content of this tutorial is available under the [CC-BY](http://creativecommons.org/licenses/by/3.0/) license, available [here](license.md). ## Please Cite **BioJava 5: A community driven open-source bioinformatics library**
*Aleix Lafita, Spencer Bliven, Andreas Prli, Dmytro Guzenko, Peter W. Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K. Burley, & Jose M. Duarte*
[PLOS Computational Biology (2019) 15 (2):e1006791.](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006791)
[](https://doi.org/10.1371/journal.pcbi.1006791) [](http://www.ncbi.nlm.nih.gov/pubmed/30735498)
Owner
- Name: Ammar Ammar
- Login: ammar257ammar
- Kind: user
- Location: The Netherlands
- Company: Maastricht University
- Repositories: 14
- Profile: https://github.com/ammar257ammar