https://github.com/amrex-combustion/pelec - v25.04

What's Changed

• Update AMReX for SyCL bug fix by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/605
• Specify clang-tidy config file location by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/606
• Update PelePhysics and AMReX by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/609
• Landon/add spray post func by @ldowen in https://github.com/AMReX-Combustion/PeleC/pull/615
• Update amrex-hydro by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/619
• Update PelePhysics and AMReX by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/612
• Rogue omp pragma near new ParallelFor by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/620
• Add runtime Diagnostics added to PelePhysics by @esclapez in https://github.com/AMReX-Combustion/PeleC/pull/616
• Add a 'coordinate' derived var. by @esclapez in https://github.com/AMReX-Combustion/PeleC/pull/623
• Simplify spray data by @ldowen in https://github.com/AMReX-Combustion/PeleC/pull/629
• Simplify move transport to ec by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/632
• Simplify diffusion flux calls by removing need for sparse EB struct by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/631
• Fix some postprocessing by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/635
• Skip covered cells for transport coeff calc by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/637
• Add documentation of flag for EB checkpoint reading by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/639
• Make tangential velocity weights const on gpu instead of thread private by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/640
• Update PelePhysics by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/630
• Plt restart bug by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/645
• Reorganize MOL file by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/636
• Add cavity flame case by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/649
• Fix flux factor multiplication by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/650
• Redistribution move by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/647
• Fix the if condition on the fillpatcher reset by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/651
• Fix static diag vector memory leak by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/652
• Remove sort in init EB and increase parallelism by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/644
• Update Intel OneAPI CI by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/653
• Update PeleMP submodule by @ldowen in https://github.com/AMReX-Combustion/PeleC/pull/646
• Update PelePhysics to fix SUNDIALS directory detection by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/654
• Try to use older version of cppcheck by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/655
• Consolidate flux register calculation into one place by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/657
• Consolidate into a post redist function by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/658
• Reorg some hydro routines by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/660
• add BC checks in Godunov cmpflx by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/662
• Remove track grid loses by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/661
• Add ccache stuff by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/659
• Clang tidy fixes by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/667
• Add in some more infrastructure for EB godunov by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/663
• Add Re-redistribution by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/664
• Test ccache by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/666
• Try using managed memory for fcompare by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/669
• Change bcnormal interface to allow for better reflections at walls by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/665
• Add plm iorder flag back to PLM by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/668
• Revert "Try using managed memory for fcompare" by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/670
• Update docs and remove fortran references and code by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/672
• Introduce mol_iorder flag by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/671
• Fix MassCons nightly test by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/674
• Add pipefail to CI. Update AMReX. by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/675
• Suppress lto-wrapper warning in CI by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/676
• Reduce order at user BCs for Godunov by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/673
• Fix datlog and update amrex by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/677
• Update tags with the use of iv and pass in ebflag by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/678
• Revert amrex update by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/681
• Fix reflux factor for MOL by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/679
• Make the tagging aware of EBs by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/682
• Update gitignore by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/683
• Fix re-redistribution by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/680
• Use sundials submodule for make TPL by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/686
• Isothermal domain bc by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/684
• Update citations by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/687
• Update submods by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/688
• Update AMReX and PelePhysics by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/690
• Increase ghost cells for the level mask by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/691
• Update submodules by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/693
• Bump setup python version by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/694
• Add dependatbot by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/695
• Change default to not use slopes in SRD for robustness by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/698
• Add codespell by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/697
• Check for warnings in mechanisms by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/696
• Reproducibility for EB covered state by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/702
• Add ccache to clang-tidy by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/701
• Add isooctane_lu inputs for PMF case by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/705
• Fix derive for state variables with ghost cells by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/707
• Some improvements and testing for the EB covered state by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/704
• remove plt vars with nans from eb-c3 by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/708
• remove dependence of Filter on Utilities by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/710
• Add some PeleC options to the GNUmakefiles by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/709
• Regex clang tidy by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/711
• Remove filter files that will now live in PelePhysics by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/714
• remove google test entry in .gitmodules file by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/716
• Allow manual dispatch of CI workflow by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/720
• Update pelephysics submodule by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/715
• Fix warnings in pelephysics by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/723
• Don't do FPE checking on MacOS by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/727
• abort on unused parmparse variables in input file in tests by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/725
• Add PeleMP cases for soot and spray by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/724
• Update github cache cleanup by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/728
• Try using macos for more RAM when running clang-tidy by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/729
• Remove prob parm passing in spray by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/730
• Bump Submodules/PelePhysics from b7d592f to 87f9706 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/734
• MD's xmas present: EB Godunov by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/731
• Bump Submodules/PelePhysics from 87f9706 to 771ab82 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/740
• Minor tweak to EB-C7 by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/742
• initialize diagnostics on restart by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/748
• Bump Submodules/PelePhysics from 771ab82 to e3f2077 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/750
• Fix Wunreachable-code by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/757
• Fix BC Types due to breaking AMReX change by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/758
• Bump Submodules/PelePhysics from c125141 to c2d6577 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/761
• Bump Submodules/PelePhysics from c2d6577 to 71fdec3 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/765
• Add citation by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/766
• Fix the doi url by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/767
• Better Problem Specific Function capability by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/743
• Bump Submodules/PelePhysics from 71fdec3 to 50b990b by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/770
• Add STL geom_type for EB in Source/InitEB.cpp by @ejyoo921 in https://github.com/AMReX-Combustion/PeleC/pull/771
• Bump Submodules/PelePhysics from 50b990b to deee71e by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/775
• Update dev model by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/776
• Update pelephysics by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/779
• Implement the state prescription at EB for the Riemann solver by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/774
• Bump Submodules/PelePhysics from c0f30b9 to 6c1a06e by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/786
• GH action deprecation fix by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/792
• Bump Submodules/PelePhysics from 6c1a06e to 5f197f2 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/791
• Run TGReact test by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/793
• Bump Submodules/PelePhysics from 5f197f2 to 1bea1bf by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/795
• Bump Submodules/PelePhysics from 1bea1bf to e4621c5 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/804
• Fix codespell by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/806
• Update PelePhysics by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/807
• Remove unused OMP variables by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/811
• fix interpolation in PMF cases by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/808
• Modifications for PelePhysics PeleParams stuff by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/812
• Bump Submodules/PelePhysics from b17d6b7 to 19ccf85 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/813
• remove HIT generation script, now lives in PelePhysics by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/817
• Additional SGS Models by @JhonCordova in https://github.com/AMReX-Combustion/PeleC/pull/802
• use template to simplify a bunch of derive functions by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/819
• update pp to get updated amrex for kestrel by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/820
• Shallow clone the submodules by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/821
• Update pelephysics by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/822
• eb-converging-nozzle: turn on diffusion so sponge layers work by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/826
• Change CDash project name by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/828
• Enable CTest earlier by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/829
• EB-FlowOverCylinder Case by @dmontgomeryNREL in https://github.com/AMReX-Combustion/PeleC/pull/827
• Update some paths for test files by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/832
• Update PelePhysics by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/831
• Fix dmasfine for EB Godunov by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/833
• Run PLM Re-Re test by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/834
• Bump Submodules/PelePhysics from 48fac13 to fe882f0 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/840
• update clang format action version to avoid distutils issue by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/841
• Remove advection from auxiliary quantities B_k by @dmontgomeryNREL in https://github.com/AMReX-Combustion/PeleC/pull/839
• Bump Submodules/PelePhysics from fe882f0 to 1e7eb65 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/842
• Fix bug in LES coefficient calculation. by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/846
• Fix bug in SFS calculation of dynamic Smagorinsky by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/849
• Add report for documentation warnings by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/851
• Bump Submodules/PelePhysics from 060a7ae to b703644 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/852
• Some fixes for warnings in 2D by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/855
• Update clang-tidy by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/856
• rotating reference frames capability by @hsitaram in https://github.com/AMReX-Combustion/PeleC/pull/850
• fix 'paraview' spelling in the readme file by @pa-one55 in https://github.com/AMReX-Combustion/PeleC/pull/864
• pin intel-oneapi version in CI by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/866
• Bump Submodules/PelePhysics from 5761481 to 327aadb by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/870
• Fix some python functionality by @marchdf in https://github.com/AMReX-Combustion/PeleC/pull/871
• Bump Submodules/PelePhysics from 327aadb to f54b084 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/873
• Bump Submodules/PelePhysics from f54b084 to 9625a85 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/878
• Bump Submodules/PelePhysics from 9625a85 to 760e2fe by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/880
• Update CI to ubuntu-24.04 by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/869
• Try to update docs deploy action by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/881
• Try to fix docs deployment by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/883
• Commit to check that the docs deploy by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/884
• Check that docs deploy by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/885
• Check that docs deploy by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/886
• Bump Submodules/PelePhysics from 760e2fe to b462d64 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/890
• add link to Pele pubs page in README by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/893
• Bump Submodules/PelePhysics from b462d64 to 88b9f99 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/892
• Bump Submodules/PelePhysics from 88b9f99 to 652a64f by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/896
• Fix bug in indexing for EB-inflow hyperbolics by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/895
• Bump Submodules/PelePhysics from 652a64f to eedcf0b by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/897
• Bump Submodules/PelePhysics from eedcf0b to 4e9548e by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/906
• Use ubuntu 24 in all CI by @jrood-nrel in https://github.com/AMReX-Combustion/PeleC/pull/907
• Fix some warnings by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/915
• Bump Submodules/PelePhysics from 4e9548e to 8b942d4 by @dependabot in https://github.com/AMReX-Combustion/PeleC/pull/914
• correct soot zerod plotting by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/916
• CI Updates - Include reference comparison by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/917
• Update PelePhysics to 25.04 by @baperry2 in https://github.com/AMReX-Combustion/PeleC/pull/930

New Contributors

• @dependabot made their first contribution in https://github.com/AMReX-Combustion/PeleC/pull/734
• @ejyoo921 made their first contribution in https://github.com/AMReX-Combustion/PeleC/pull/771
• @JhonCordova made their first contribution in https://github.com/AMReX-Combustion/PeleC/pull/802
• @dmontgomeryNREL made their first contribution in https://github.com/AMReX-Combustion/PeleC/pull/827
• @pa-one55 made their first contribution in https://github.com/AMReX-Combustion/PeleC/pull/864

Full Changelog: https://github.com/AMReX-Combustion/PeleC/compare/v23.03...v25.04

- C++
Published by baperry2 about 1 year ago