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Recent Releases of https://github.com/amrex-combustion/pelephysics

https://github.com/amrex-combustion/pelephysics - PelePhysics 25.04

What's Changed

  • Generate qssa.yaml via list by @malihass in https://github.com/AMReX-Combustion/PelePhysics/pull/367
  • Various CEPTR bug fixes by @malihass in https://github.com/AMReX-Combustion/PelePhysics/pull/366
  • Fix a couple of Code QL warnings by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/368
  • The PMF.H kernel was a Fortran converted routine, make it more C++ by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/369
  • Get rid of ordering diff of qss species by @malihass in https://github.com/AMReX-Combustion/PelePhysics/pull/373
  • Calculate some CK routines without using thread private arrays by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/370
  • Put molecular weights in global array by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/375
  • Use global_(i)mw throughout Eos and Reactors. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/376
  • Move diagnostics over from LMeX. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/377
  • Revert "Use global_(i)mw throughout Eos and Reactors." by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/378
  • Update SUNDIALs and MAGMA by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/379
  • Species as reactant and product by @malihass in https://github.com/AMReX-Combustion/PelePhysics/pull/374
  • Fix header declarations of ckinu and ckkfkr by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/382
  • Compute typical values on device by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/372
  • Disallow Sutherland transport with SRK and GammaLaw by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/384
  • Better global mw by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/385
  • Remove deprecated SinglePoint code by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/386
  • Spring Cleaning: Docs and PMF by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/387
  • Quiet warnings in Utility/Diagnostics by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/388
  • Fix one warning left over. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/389
  • Yet another missing warning. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/390
  • Update DiagFrameFlane with latest LMeX version. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/392
  • Update Python in CI by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/394
  • Update ceptr python requirement to 3.10 by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/395
  • Update ReactEval for new LMeX format by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/393
  • Restore CVODE OMP support by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/397
  • Precompute SRK quantities using CEPTR by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/398
  • Fix sundials lib dir detection by @lainme in https://github.com/AMReX-Combustion/PelePhysics/pull/399
  • Update Intel OneAPI CI by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/400
  • Fix input files by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/402
  • Fix input files by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/403
  • Clang tidy fixes by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/404
  • Compute cvode typical values using ParallelFor by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/406
  • Use the sundials submodule for make TPL by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/410
  • Fix hardcoded double by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/411
  • Upgrade CEPTR to cantera 3.0 by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/409
  • add SRK EosEval test to CI by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/412
  • Add intel-llvm option to ThirdParty makefile by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/413
  • fix rescaling for FORD by @malihass in https://github.com/AMReX-Combustion/PelePhysics/pull/414
  • Fix fixed width formatting in diag headers by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/417
  • Remove CMakeLists by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/418
  • Fix implicit bool by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/419
  • Fix warnings in PMF by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/420
  • Fix narrowing conversions by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/421
  • Replace use of amrex::max to std::max by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/422
  • Fix values in max by casting to int by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/423
  • Bump setup python version by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/424
  • Fix warnings by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/425
  • Fix codeql by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/426
  • Add codespell by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/427
  • Fix last PeleC codeql by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/428
  • Enable ccache by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/429
  • Add ifdef to remove BDF for large mechanisms on the GPU by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/430
  • Changes due to updated black by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/432
  • Update isooctane_lu mechanism to allow it to be generated by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/431
  • Clip the concentrations on fractional pows by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/433
  • enable COMP=clang for TPL by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/434
  • diagPDF: barriers on atomic add to bins by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/436
  • Add multiprocessing for ceptr by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/437
  • Add a cvode switch on the ordering by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/383
  • Remove tc thread private array by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/435
  • Simplify ceptr python code by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/438
  • Move dcvpdtemp by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/439
  • Upgrade CEPTR thermo generation by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/440
  • Add NASA9 polynomials by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/441
  • Fix ceptr format files by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/444
  • Filter Utility by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/445
  • Add the Util folder from PeleMP by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/443
  • add interp_type option and get rr function for pltfilemanager by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/447
  • Move PeleMP Source files to PelePhysics by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/448
  • Move PeleMP docs into PelePhysics by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/449
  • Add amrex and sundials as submodules of PelePhysics by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/451
  • Bump Submodules/amrex from edb4c25 to 43d71da by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/453
  • Move a bunch of directories around by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/452
  • Fix error of PmfData on GPU (resolved conflicts from file reorg) by @ensonun in https://github.com/AMReX-Combustion/PelePhysics/pull/457
  • Fix warnings by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/458
  • Move PeleRad source files to PelePhysics by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/459
  • Fix warnings in PeleRad by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/461
  • Remove prob parm passing in spray by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/462
  • Update github cache cleanup by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/464
  • Use AMReX assert by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/463
  • Rename macro by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/465
  • Updates for PeleLMeX by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/466
  • Fix warnings by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/467
  • Bump Submodules/amrex from 43d71da to 75571e2 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/468
  • Fix dependency warning from pandas about pyarrow by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/470
  • README updates/citation by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/471
  • Need a return statement in BDF even for big mech. by @esclapez in https://github.com/AMReX-Combustion/PelePhysics/pull/472
  • Bump Submodules/amrex from 75571e2 to 296ed40 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/474
  • Add clang-format dependency for ceptr by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/475
  • Surface Chemistry - Modified mechanism.H preprocessor directives & mechanism.cpp reaction maps by @jAnirudh in https://github.com/AMReX-Combustion/PelePhysics/pull/473
  • Fix regrid for radiation module by @wjge in https://github.com/AMReX-Combustion/PelePhysics/pull/477
  • update amrex by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/476
  • surfchem - modified the ckinu method in the ceptr ck module by @jAnirudh in https://github.com/AMReX-Combustion/PelePhysics/pull/478
  • Bump Submodules/amrex from 2ecafcf to 9751217 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/479
  • Max substep input for CVODE by @ThomasHowarth in https://github.com/AMReX-Combustion/PelePhysics/pull/481
  • Add citation by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/482
  • Fix doi url link by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/483
  • n_files input for DiagFramePlane diagnostic by @ThomasHowarth in https://github.com/AMReX-Combustion/PelePhysics/pull/485
  • Bump Submodules/amrex from 9751217 to 728eec4 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/488
  • Move turb inflow helpers from PeleLMeX and add documentation by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/489
  • modify bounds checkings in the radiation module by @wjge in https://github.com/AMReX-Combustion/PelePhysics/pull/490
  • Add cray to compilers for make TPL by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/491
  • GH action deprecation fix by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/493
  • Bump python versions in CI and CEPTR by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/494
  • Update black for ceptr by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/495
  • Bump Submodules/amrex from 728eec4 to 1735fd5 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/496
  • update Factory to allow for chained inheritance by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/498
  • Fix clang-tidy warning by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/501
  • Update the CEPTR usage doc slightly. by @EnnaDelfen in https://github.com/AMReX-Combustion/PelePhysics/pull/499
  • Fix default viscositymuref value in Sutherland model by @JhonCordova in https://github.com/AMReX-Combustion/PelePhysics/pull/502
  • Fix codespell by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/505
  • Add nvhpc compiler to thirdparty by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/503
  • Update SUNDIALS to 7.0 by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/500
  • Bump Submodules/amrex from 1735fd5 to f141191 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/506
  • peleparams: common data container for PMF, transport (others in future) by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/507
  • Fix sundials link order by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/508
  • update amrex to get kestrel make update by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/509
  • Shallow clone submodules by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/510
  • Manifold Models: Tables and Network capability, wrappers in EOS, Transport by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/492
  • update amrex to get bicgcg fix by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/512
  • Simplify Make.package in mechanisms by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/515
  • Added functions to get nsteps after reading plot file by @SreejithNREL in https://github.com/AMReX-Combustion/PelePhysics/pull/516
  • revert sundials to 7.0.0 because of 7.1.1 deprecations by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/517
  • Update amrex by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/518
  • Fix warnings by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/519
  • Bump Submodules/amrex from c09da99 to de4dc97 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/523
  • update clang format action version to avoid distutils issue by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/525
  • go back to recommending shallow submodules by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/524
  • Soot cleanup by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/526
  • Update readme with citation by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/527
  • Support Manifold EoS in RK64 Reactor by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/513
  • Add warning report to docs by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/528
  • Bump Submodules/amrex from de4dc97 to 8349789 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/529
  • Remove null pointer dereference for GammaLaw EOS by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/533
  • Some fixes for warnings in 2D by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/534
  • Update SUNDIALS to 7.1.1 by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/531
  • Fix clang-tidy by @marchdf in https://github.com/AMReX-Combustion/PelePhysics/pull/535
  • pin intel-oneapi version in CI by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/541
  • Bump Submodules/amrex from 8349789 to 00e6f75 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/540
  • Make EOS functions templates to allow for CellData as an argument by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/536
  • Unit conversions by @dmontgomeryNREL in https://github.com/AMReX-Combustion/PelePhysics/pull/539
  • Tidied up nested namespace in Utilities for clang-tidy by @dmontgomeryNREL in https://github.com/AMReX-Combustion/PelePhysics/pull/545
  • Update CI to ubuntu-24.04 by @jrood-nrel in https://github.com/AMReX-Combustion/PelePhysics/pull/546
  • Bump Submodules/amrex from 00e6f75 to f27eb69 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/550
  • speciesNames for Manifold EOS by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/542
  • update sundials - sycl 2025 fix by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/551
  • CEPTR: PLOG reaction support at constant pressure by @terencelehmann in https://github.com/AMReX-Combustion/PelePhysics/pull/549
  • Docs workflow update by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/554
  • Bump Submodules/amrex from f27eb69 to b3f6738 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/555
  • add link to pubs page in README by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/556
  • update cantera to 3.1 to get fix for occasional issue with qss conversion by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/558
  • Manifold EOS: variance support by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/552
  • Bump Submodules/amrex from b3f6738 to 69f1ac8 by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/559
  • Inconsistency of MW/iMW precisions in CEPTR by @EnnaDelfen in https://github.com/AMReX-Combustion/PelePhysics/pull/560
  • Bump Submodules/amrex from 69f1ac8 to 06b4a5b by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/562
  • Free pmf dynamic data structures by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/563
  • Bump Submodules/amrex from 06b4a5b to 7626a3f by @dependabot in https://github.com/AMReX-Combustion/PelePhysics/pull/565
  • add 4spec nonreacting mech for co2snow by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/567
  • update amrex and sundials to latest releases by @baperry2 in https://github.com/AMReX-Combustion/PelePhysics/pull/568

New Contributors

  • @lainme made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/399
  • @dependabot made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/453
  • @ensonun made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/457
  • @jAnirudh made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/473
  • @wjge made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/477
  • @JhonCordova made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/502
  • @SreejithNREL made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/516
  • @dmontgomeryNREL made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/539
  • @terencelehmann made their first contribution in https://github.com/AMReX-Combustion/PelePhysics/pull/549

Full Changelog: https://github.com/AMReX-Combustion/PelePhysics/compare/v23.03...v25.04

- C++
Published by baperry2 about 1 year ago

https://github.com/amrex-combustion/pelephysics - PelePhysics 23.03

- C++
Published by esclapez over 3 years ago