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Open Source Science

https://github.com/amypad/miutil

Basic functionality needed for AMYPAD

https://github.com/amypad/miutil

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.9%) to scientific vocabulary

Keywords

cuda matlab medical-imaging python

Keywords from Contributors

mr pet processing
Last synced: 5 months ago · JSON representation

Repository

Basic functionality needed for AMYPAD

Basic Info
  • Host: GitHub
  • Owner: AMYPAD
  • License: other
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 216 KB
Statistics
  • Stars: 0
  • Watchers: 5
  • Forks: 2
  • Open Issues: 4
  • Releases: 24
Topics
cuda matlab medical-imaging python
Created over 5 years ago · Last pushed 12 months ago
Metadata Files
Readme

README.rst 

miutil
======

Medical imaging utilities.

|Version| |Py-Versions| |Conda| |Tests| |Coverage| |DOI| |LICENCE|

Basic functionality needed for `AMYPAD `_
and `NiftyPET `_.


Install
-------

Intended for inclusion in requirements for other packages.
The package name is ``miutil``. Extra install options include:

- cuda

  - provides `miutil.cuinfo `_

- mbeautify

  - provides `miutil.mlab.beautify `_

- nii

  - provides `miutil.imio.nii `_

- plot

  - provides `miutil.plot `_

    - includes a useful 3D multi-volume ``imscroll`` function which depends only on ``matplotlib``

- web

  - provides `miutil.web `_


To install extras and their dependencies,
use the package name ``miutil[option1,option2]``.


.. |Tests| image:: https://img.shields.io/github/actions/workflow/status/AMYPAD/miutil/test.yml?branch=master&logo=GitHub
   :target: https://github.com/AMYPAD/miutil/actions
.. |Coverage| image:: https://codecov.io/gh/AMYPAD/miutil/branch/master/graph/badge.svg
   :target: https://codecov.io/gh/AMYPAD/miutil
.. |Version| image:: https://img.shields.io/pypi/v/miutil.svg?logo=python&logoColor=white
   :target: https://github.com/AMYPAD/miutil/releases
.. |Py-Versions| image:: https://img.shields.io/pypi/pyversions/miutil.svg?logo=python&logoColor=white
   :target: https://pypi.org/project/miutil
.. |Conda| image:: https://img.shields.io/conda/v/conda-forge/miutil.svg?label=conda&logo=conda-forge
   :target: https://anaconda.org/conda-forge/miutil
.. |DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.4281542.svg
   :target: https://doi.org/10.5281/zenodo.4281542
.. |LICENCE| image:: https://img.shields.io/pypi/l/miutil.svg
   :target: https://raw.githubusercontent.com/AMYPAD/miutil/master/LICENCE.md

Owner

  • Name: AMYPAD
  • Login: AMYPAD
  • Kind: organization
  • Location: Europe

Amyloid imaging to prevent Alzheimer's Disease

GitHub Events

Total
  • Push event: 2
  • Pull request event: 2
  • Fork event: 1
  • Create event: 1
Last Year
  • Push event: 2
  • Pull request event: 2
  • Fork event: 1
  • Create event: 1

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 145
  • Total Committers: 4
  • Avg Commits per committer: 36.25
  • Development Distribution Score (DDS): 0.048
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Casper da Costa-Luis c****l@p****g 138
Casper da Costa-Luis i****g@c****l 3
Pawel p****z@u****k 3
Pawel Markiewicz p****z@g****m 1
Committer Domains (Top 20 + Academic)
ucl.ac.uk: 1 cdcl.ml: 1 physics.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 9
  • Total pull requests: 25
  • Average time to close issues: 23 days
  • Average time to close pull requests: 13 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 1.48
  • Merged pull requests: 24
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 11 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • casperdcl (9)
Pull Request Authors
  • casperdcl (23)
  • Julievkm (2)
Top Labels
Issue Labels
enhancement (4) bug (3) documentation (1)
Pull Request Labels
bug (13) framework (13) enhancement (13) documentation (4)

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 5,223 last-month
  • Total docker downloads: 42
  • Total dependent packages: 1
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 30
  • Total maintainers: 2
pypi.org: miutil

Medical imaging utilities for the AMYPAD and NiftyPET projects

  • Versions: 26
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 5,223 Last month
  • Docker Downloads: 42
Rankings
Downloads: 3.1%
Docker downloads count: 3.8%
Average: 9.6%
Dependent packages count: 10.0%
Dependent repos count: 21.7%
Maintainers (2)
casper.dcl pjmark
Last synced: 6 months ago
conda-forge.org: miutil

Basic functionality needed for https://github.com/AMYPAD/amypad and https://github.com/NiftyPET/NiftyPET.

  • Versions: 4
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Average: 100%
Last synced: 6 months ago

Dependencies

.github/workflows/comment-bot.yml actions
  • actions/checkout v2 composite
  • actions/github-script v2 composite
.github/workflows/test.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • casperdcl/deploy-pypi v2 composite
  • codecov/codecov-action v1 composite
  • reviewdog/action-setup v1 composite
  • softprops/action-gh-release v1 composite
pyproject.toml pypi
  • tqdm >=4.40.0