variantcalling-snakemake
Automated HPC Cluster workflow for multiple samples using GATK variant calling tools using snakemake
Science Score: 44.0%
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○Scientific vocabulary similarity
Low similarity (2.1%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Automated HPC Cluster workflow for multiple samples using GATK variant calling tools using snakemake
Basic Info
- Host: GitHub
- Owner: RiyaS-Verma
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Size: 42 KB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 3 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
Citation
README.md
VariantCalling-Snakemake
Automated HPC Cluster slurm workflow with Snakemake for multiple samples to perform Variant calling using GATK tools. This code was written for SNV analysis but rules may be modified for any variant calling analysis.
Owner
- Name: Riya Verma
- Login: RiyaS-Verma
- Kind: user
- Repositories: 1
- Profile: https://github.com/RiyaS-Verma
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Verma" given-names: "Riya" orcid: "https://orcid.org/0000-0003-1795-1497" title: "VariantCalling-Snakemake" version: 1.0.0 doi: 10.5281/zenodo.1234 date-released: 2023-01-13 url: "https://github.com/Riya2010/VariantCalling-Snakemake"