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tsdf4matlab

https://github.com/biomarkersparkinson/tsdf4matlab

Science Score: 49.0%

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    Low similarity (14.0%) to scientific vocabulary
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Repository

Basic Info
  • Host: GitHub
  • Owner: biomarkersParkinson
  • License: apache-2.0
  • Language: MATLAB
  • Default Branch: main
  • Size: 50.8 KB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 0
  • Open Issues: 4
  • Releases: 2
Created almost 3 years ago · Last pushed about 2 years ago
Metadata Files
Readme License Citation

README.md

Matlab wrapper for the Python tsdf library

Latest release DOI GitHub license

Installation

In order to use the tsdf library in Matlab, you need to install the tsdf library in Python and then link it to MatLab. The following steps will guide you through the installation process.

Setting Up MATLAB-Python Integration

  1. Ensure you have MATLAB version R2021b or higher.

  2. Check your MATLAB version by running ver in MATLAB.

  3. (optional) Visit MATLAB's Python Support Page to verify compatible Python versions for your MATLAB version.

  4. Download and install a Python version >= 3.9.

  5. In MATLAB, execute the following code, replacing 'enter_path_to_python_executable_here' with the path to your python.exe file:

matlab pyenv('Version','enter_path_to_python_executable_here') For example: matlab pyenv('Version','C:\Users\username\AppData\Local\Programs\Python\Python39\python.exe')

  1. Confirm the setup by running:

matlab pe = pyenv; pe.Version

You should receive confirmation messages indicating the Python version linked to MATLAB.

Installing Required Libraries

  1. If you had a previous Python version installed, ensure the required libraries are installed in your new Python 3.9 environment (linked to MATLAB).

  2. Open the Windows command terminal and navigate to the Python 3.9 installation folder:

bash cd C:\Users\username\AppData\Local\Programs\Python\Python39

  1. Launch the Python terminal:

bash python

  1. Install necessary libraries (e.g., NumPy and SciPy) by entering:

python import sys import subprocess subprocess.check_call([sys.executable, '-m', 'pip', 'install','tsdf'])

Using the MATLAB Wrapper

  1. Clone this repository to your local machine.

  2. Open MATLAB and add the cloned folder to your MATLAB path.

matlab addpath('full_path_to_cloned_folder')

Note

We aim to use this tutorial to integrate tsdf into the matlab code:

https://aleksandarhaber.com/tutorial-on-how-to-execute-python-code-directly-matlab/

The tutorial covers how to import numpy arrays from python code export them from Matlab double. A discussion on the topic is available here:

https://www.mathworks.com/matlabcentral/answers/157347-convert-python-numpy-array-to-double

Another article that is needed is on how to import python dict into Matlab and how to export them from Matlab struct.

https://nl.mathworks.com/help/matlab/matlab_external/python-dict-variables.html

Owner

  • Name: Digital Biomarkers for Parkinson's disease
  • Login: biomarkersParkinson
  • Kind: organization
  • Location: Netherlands

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