osiris
osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model - Published in JOSS (2023)
Science Score: 100.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 12 DOI reference(s) in README and JOSS metadata -
✓Academic publication links
Links to: joss.theoj.org -
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
✓Institutional organization owner
Organization jgcri has institutional domain (www.pnnl.gov) -
✓JOSS paper metadata
Published in Journal of Open Source Software
Scientific Fields
Engineering
Computer Science -
40% confidence
Last synced: 6 months ago
·
JSON representation
·
Repository
Processes climate impacts on agricultural yields for GCAM
Basic Info
- Host: GitHub
- Owner: JGCRI
- License: other
- Language: R
- Default Branch: main
- Homepage: https://jgcri.github.io/osiris/
- Size: 11 MB
Statistics
- Stars: 7
- Watchers: 4
- Forks: 4
- Open Issues: 1
- Releases: 5
Created almost 4 years ago
· Last pushed 10 months ago
Metadata Files
Readme
Changelog
License
Citation
Support
Zenodo
README.md
<!-- badges: end -->
Introduction
osiris is R package to process climate impacts on agricultural yields for the Global Change Analysis Model (GCAM).
Citation
Ahsan, H., Khan, Z., Snyder, A., Kyle, P., & Vernon, C.R. (2023). osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model. Journal of Open Source Software, 8(85), 5226. https://doi.org/10.21105/joss.05226
Installation Guide
Download and install:
- R (https://www.r-project.org/)
- R studio (https://www.rstudio.com/) (Optional)
In R or R studio:
r
install.packages("devtools")
devtools::install_github("JGCRI/osiris")
Additional steps for UBUNTU from a terminal
sudo add-apt-repository ppa:ubuntugis/ppa
sudo apt-get update
sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libudunits2-dev libproj-dev libavfilter-dev
Additional steps for MACOSX from a terminal
brew install pkg-config
Related Publications
- Müller, C., Franke, J., Jägermeyr, J., Ruane, A.C., Elliott, J., Moyer, E., Heinke, J., Falloon, P.D., Folberth, C., Francois, L. and Hank, T., 2021. Exploring uncertainties in global crop yield projections in a large ensemble of crop models and CMIP5 and CMIP6 climate scenarios. Environmental Research Letters, 16(3), p.034040. https://doi.org/10.1088/1748-9326/abd8fc
- Franke, J.A., Müller, C., Elliott, J., Ruane, A.C., Jägermeyr, J., Snyder, A., Dury, M., Falloon, P.D., Folberth, C., François, L. and Hank, T., 2020. The GGCMI Phase 2 emulators: global gridded crop model responses to changes in CO 2, temperature, water, and nitrogen (version 1.0). Geoscientific Model Development, 13(9), pp.3995-4018. https://doi.org/10.5194/gmd-13-3995-2020
- Snyder, A., Calvin, K.V., Phillips, M. and Ruane, A.C., 2019. A crop yield change emulator for use in GCAM and similar models: Persephone v1. 0. Geoscientific Model Development, 12(4), pp.1319-1350. https://doi.org/10.5194/gmd-12-1319-2019
Owner
- Name: Joint Global Change Research Institute
- Login: JGCRI
- Kind: organization
- Location: College Park, MD, USA
- Website: https://www.pnnl.gov/projects/jgcri
- Repositories: 129
- Profile: https://github.com/JGCRI
Advancing fundamental understanding of human and Earth systems
JOSS Publication
osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model
Published
May 24, 2023
Volume 8, Issue 85, Page 5226
Authors
Hamza Ahsan
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Zarrar Khan
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Abigail Snyder
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Page Kyle
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA
Chris Vernon
Pacific Northwest National Laboratory, Richland, WA, USA
Pacific Northwest National Laboratory, Richland, WA, USA
Editor
Martin Fleischmann
Tags
climate change agriculture GCAMCitation (CITATION.md)
<!-------------------------->
<!-------------------------->
# Citation
<!-------------------------->
<!-------------------------->
Ahsan, H., Khan, Z., Snyder, A., Kyle, P., & Vernon, C.R. (2023). osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model. Journal of Open Source Software, 8(85), 5226. https://doi.org/10.21105/joss.05226
<!-------------------------->
<!-------------------------->
# BibText
<!-------------------------->
<!-------------------------->
```
@article{Ahsan2023,
doi = {10.21105/joss.05226},
url = {https://doi.org/10.21105/joss.05226},
year = {2023},
publisher = {The Open Journal},
volume = {8},
number = {85},
pages = {5226},
author = {Hamza Ahsan and Zarrar Khan and Abigail Snyder and Page Kyle and Chris Vernon},
title = {osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model},
journal = {Journal of Open Source Software}
}
```
GitHub Events
Total
- Create event: 1
- Release event: 1
- Issues event: 1
- Watch event: 3
- Issue comment event: 1
- Push event: 2
- Fork event: 2
Last Year
- Create event: 1
- Release event: 1
- Issues event: 1
- Watch event: 3
- Issue comment event: 1
- Push event: 2
- Fork event: 2
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| hahsan1 | 7****1 | 89 |
| Zarrar Khan | z****n@p****v | 19 |
| Zarrar Khan | k****n@g****m | 2 |
Committer Domains (Top 20 + Academic)
pnnl.gov: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 4
- Total pull requests: 25
- Average time to close issues: about 1 month
- Average time to close pull requests: 3 days
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 1.75
- Average comments per pull request: 0.04
- Merged pull requests: 25
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kauedesousa (1)
- Tonyzhao610 (1)
Pull Request Authors
- hahsan1 (16)
- zarrarkhan (9)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- class * imports
- data.table * imports
- dplyr * imports
- foreach * imports
- gcamdata * imports
- magrittr * imports
- ncdf4 * imports
- raster * imports
- rlang * imports
- sp * imports
- tibble * imports
- tidyr * imports
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
.github/workflows/build.yml
actions
- actions/cache v1 composite
- actions/checkout v1 composite
- r-lib/actions/setup-pandoc v2-branch composite
- r-lib/actions/setup-r v2-branch composite
- r-lib/actions/setup-tinytex v2-branch composite
.github/workflows/docs.yaml
actions
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test_coverage.yml
actions
- actions/cache v1 composite
- actions/checkout v1 composite
- r-lib/actions/setup-pandoc v2-branch composite
- r-lib/actions/setup-r v2-branch composite
- r-lib/actions/setup-tinytex v2-branch composite