Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.1%) to scientific vocabulary
Repository
Gene-flank analysis tool
Basic Info
- Host: GitHub
- Owner: wtmatlock
- License: mit
- Language: Python
- Default Branch: main
- Size: 7.56 MB
Statistics
- Stars: 29
- Watchers: 4
- Forks: 9
- Open Issues: 9
- Releases: 7
Metadata Files
README.md
This repository accompanies the paper Matlock W, Lipworth S, Constantinides B, Peto TEA, Walker AS, Crook D, Hopkins S, Shaw LP, Stoesser N. Flanker: a tool for comparative genomics of gene flanking regions. Microbial Genomics. 2021. doi: https://doi.org/10.1099/mgen.0.000634
Installation and documentation
Reproducibility
You can reproduce the analysis performed in our manuscript and the figures in the Binder environment below (click on the Binder badge, N.B. it is a bit slow to load - once the environment is loaded open the flanker.rmd file).
# Tests
# License Flanker is available under the MIT License.
Owner
- Name: William Matlock
- Login: wtmatlock
- Kind: user
- Location: Oxford, UK
- Twitter: wtmatlock
- Repositories: 2
- Profile: https://github.com/wtmatlock
Citation (CITATION.cff)
# YAML 1.2
---
authors:
-
family-names: Matlock
given-names: W
-
family-names: Lipworth
given-names: S
-
family-names: Constantinides
given-names: B
-
family-names: Peto
given-names: TEA
-
family-names: Walker
given-names: AS
-
family-names: Crook
given-names: D
-
family-names: Hopkins
given-names: S
-
family-names: Shaw
given-names: LP
-
family-names: Stoesser
given-names: N
cff-version: "1.1.0"
date-released: 2021-02-27
doi: "10.1101/2021.02.22.432255"
license: MIT
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/wtmatlock/flanker"
title: "Flanker: a tool for comparative genomics of gene flanking regions"
version: "0.1.5"
...
GitHub Events
Total
- Watch event: 3
- Delete event: 2
- Issue comment event: 1
- Push event: 13
- Fork event: 3
Last Year
- Watch event: 3
- Delete event: 2
- Issue comment event: 1
- Push event: 13
- Fork event: 3
Dependencies
- Levenshtein *
- biopython *
- networkx *
- pandas *
- actions/checkout v2 composite
- s-weigand/setup-conda v1 composite