VaMPy - v1.0.5

What's Changed

• Add comments for post-processing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/138
• import numpy in problem file by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/139
• Hotfix for expat dependency (VTK) by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/144
• Pin sphinx version by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/145
• Update imports by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/146
• Update CI by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/148
• Add refinement based on Geodesic distance by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/149
• update scipy syntax by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/151
• Fixate dependency versions by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/153
• License header by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/155
• Update LICENSE file to clarify licensing details by @johannesring in https://github.com/KVSlab/VaMPy/pull/156

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v1.0.4...v1.0.5

Scientific Software - Peer-reviewed - Python
Published by keiyamamo 12 months ago

VaMPy - VaMPy v1.0.4

What's Changed

• Bump version to 1.0.4 by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/137
• Update dockerfile with correct Python version

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v1.0.3...v1.0.4

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg about 2 years ago

VaMPy - VaMPy v1.0.3 - Moving domain meshing & CFD

Main feature updates

• Add meshing steps for moving domain simulations
• Added MovingAtrium.py script for moving left atrium simulations
• Additional parameters to meshing script
• Added support for meshing single-boundary (inlet/outlet-only) models

What's Changed

• Add support for meshing single boundary model by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/112
• Add resampling step as parameter by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/113
• Improvements to flow metrics computation. by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/114
• Update to flow extension modeling by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/116
• Update Womersley.py by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/117
• modify write_mesh function by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/119
• modify dependency by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/118
• Add option to specify flow rate factor by @johannesring in https://github.com/KVSlab/VaMPy/pull/120
• fix code coverage report by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/121
• rescale resampling step and switch to json for saving probe points by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/124
• Add meshing for moving domains and MovingAtrium.py by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/125
• Rename ToolRepairSTL by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/127
• Update to Network BCs by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/128
• Add simulation tests by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/129
• Fix to Network boundary conditions by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/131
• Add deformation to MovingAtrium by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/133
• Update probe import by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/134

New Contributors

• @johannesring made their first contribution in https://github.com/KVSlab/VaMPy/pull/120

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v1.0.2...v1.0.3

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg about 2 years ago

VaMPy - VaMPy v1.0.2 - Updates prior to JOSS publication

What's Changed

• Update installation instructions by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/107
• Hotfix compress mesh by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/108
• Fix typo's in documentation by @stefsmeets in https://github.com/KVSlab/VaMPy/pull/106
• Update test data by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/109
• Improved re-meshing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/110
• Add VMTK as VaMPy dependency by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/111

New Contributors

• @stefsmeets made their first contribution in https://github.com/KVSlab/VaMPy/pull/106

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v1.0.1...v1.0.2

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg almost 3 years ago

VaMPy - VaMPy v1.0.1

Changes

• Temporary hotfix for creating docker image

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg almost 3 years ago

VaMPy - VaMPy v1.0.0

Updates and New Features

• Problem file for Left Atrium CFD simulation
• Phase-averaging and cycle-to-cycle averaging for post-processing scripts
• Conversion of compact velocity and pressure solution to Paraview-viewable format
• Documentation build with Jupyter-book and hosted on Github pages
• CI hosted on Github actions
• Dockerfile added for Vampy container setup
• Major refactoring of project structure

What's Changed

• Hotfix for extracting open boundaries by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/66
• Update SSH config by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/67
• Updated documentation by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/72
• Convert velocity and pressure to visualizable format by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/70
• Add (rigid) atrium problem file by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/71
• Update to installation by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/73
• Add phase averaging of flow quantities by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/74
• Remove length param from tolerance call by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/75
• added mesh and result files to gitignore by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/78
• removed dabla function by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/79
• Add phase averaged velocity by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/76
• Add mutually exclusive groups and more verbose formatter class by @jorgensd in https://github.com/KVSlab/VaMPy/pull/81
• Add more verbose formatter class to post-processing argparse by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/83
• Add sample step size parameter by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/84
• Add step to function call for flow & sim metrics by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/86
• Removed extra step for saved time steps by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/87
• Add cycle average to post-processing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/91
• Adding Conda-env and Dockerfile by @jorgensd in https://github.com/KVSlab/VaMPy/pull/80
• Refactor VaMPy by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/92
• Reformat arguments, and imports in problem files by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/93
• Update HPC cluster configuration and guidelines by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/94
• Add option to ignore boundary layers by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/95
• Updates to docs, and project structure by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/98
• Add scaling method by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/99
• Replace artery model with atrium model by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/100
• Bump Vampy version to v1.0.0 by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/102
• Add section on MPI in CFD docs by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/101

New Contributors

• @jorgensd made their first contribution in https://github.com/KVSlab/VaMPy/pull/81

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v0.2...v1.0.0

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg almost 3 years ago

VaMPy - VaMPy v0.2

Main changes

• Added tests for post-processing
• Move to morphMan v1.2, VMTK 1.5 and VTK 9.1.0
• Add atrium option to preprocessing
• Add ECAP to hemodynamic indices
• Added formula sheet for post-processing
• Move CI to CircleCI

What's Changed

• Update text in documentation and readme by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/39
• Update hotfix script by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/40
• use write_checkpoint instead of write by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/37
• Setup CircleCI by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/43
• Add fluid density by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/42
• Shorten demo time by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/45
• Improved Artery.py comments by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/44
• added timer inside loop for all the variables. by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/47
• updated to allow 2D case by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/36
• Add atrium preprocessing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/41
• Update installations for Linux by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/48
• Update computehemodynamicindices.py by @ehsannkh in https://github.com/KVSlab/VaMPy/pull/49
• Update documentation by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/51
• Update probe visualization by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/53
• Add formula sheet for post-processing quantities by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/56
• Fix definition of t+ by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/61
• Update dependencies to VMTK 1.5 and VTK 9.1.0 by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/63
• Added tests for post-processing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/64
• Install morphMan from conda-forge by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/65

New Contributors

• @ehsannkh made their first contribution in https://github.com/KVSlab/VaMPy/pull/49

Full Changelog: https://github.com/KVSlab/VaMPy/compare/v0.1...v0.2

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg over 3 years ago

VaMPy - VaMPy v0.1

Main changes

• Renamed project from Aneurysm workflow to Vascular Modeling Pypeline
• Improved user-friendliness of Artery.py
• Add documentation page for VaMPy
• Added visualization script for probes
• Removed neck plane detection
• Removed fenicstools dependencies

What's Changed

• Add pre processing test & CI by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/3
• Improve visualisation in pre processing by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/6
• Use json for saving parameters by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/7
• Artery.py refactor & vector solution by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/15
• Update compute flow metrices by @keiyamamo in https://github.com/KVSlab/VaMPy/pull/20
• Removed neck plane detection by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/22
• Add visualize probes by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/21
• Add instantaneous WSS by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/24
• Remove dependency to fenicstools by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/35
• Add Python script for automating VMTK hotfixes by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/38
• Add documentation and rename project by @hkjeldsberg in https://github.com/KVSlab/VaMPy/pull/34

Full Changelog: https://github.com/KVSlab/VaMPy/commits/v0.1

Scientific Software - Peer-reviewed - Python
Published by hkjeldsberg about 4 years ago