Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/andrewiom/biodiversity-graph-db

https://github.com/andrewiom/biodiversity-graph-db

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: AndrewIOM
  • License: mit
  • Language: F#
  • Default Branch: master
  • Size: 1.01 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed 12 months ago
Metadata Files
Readme License

README.MD

Palaeo-Biodiversity Indicators - Graph Database

DOI

A graph database designed to represent biodiversity indicators within the palaeoecological and palaeoenvironmental record.

The following core components exist in the graph:

  • Time index: based on nodes that represent individual years, and related in sequence, the time index is used to relate occurrences, time-series and individual dates to points in time. The time index also supports qualitative time periods (e.g. pollen zones).

  • Taxonomic tree: the taxonomic tree is based on nodes with relations representing sub-taxa and parent taxa.

  • Literature sources: representing bibliographic and grey literature sources.

Based on these components, the following concepts are modelled:

  • Biotic proxies and inference to specific taxa: intermediate nodes are used to represent a hyper-edge between a biotic proxy, a method of inferring the 'real' taxon, and the 'real' taxon. The taxon may be of any rank. If there is no given method of inference (e.g., use of a particular morphological key), then the method of inference may be marked as implicit. A single occurrence of the intermediate node will therefore exist for each morphotype or biotic unit identified in a particular study timeline.

  • Study timelines: a study timeline of a particular temporal extent may be continuous or discontinuous (with hiatuses). For dating, it may either be of known continuous time periods (e.g. annual wood increments), or discontinuous based on a number of individual dates. Individual dates are themselves represented as nodes, which contain properties relating to dating method, the material dated, and any calibration used.

  • Timeline contexts: the sampling context of a particular timeline is represented in a context node. This contains information on the geographical location and parent material (e.g., peat core, sediment core).

Owner

  • Name: Andrew Martin
  • Login: AndrewIOM
  • Kind: user
  • Location: Isle of Man
  • Company: University of Oxford

Environmental Scientist - Long-Term Ecology, Biodiversity, Dendrochronology

GitHub Events

Total
  • Release event: 2
  • Delete event: 3
  • Push event: 15
  • Pull request event: 8
  • Create event: 7
Last Year
  • Release event: 2
  • Delete event: 3
  • Push event: 15
  • Pull request event: 8
  • Create event: 7

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 24
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 day
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 24
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 11
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 day
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • AndrewIOM (21)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

src/BiodiversityCoder/BiodiversityCoder.csproj nuget
  • Microsoft.Graphics.Win2D 1.0.0.30
  • Microsoft.WindowsAppSDK 1.0.0
.github/workflows/main.yml actions
  • actions/checkout v3 composite
  • actions/setup-dotnet v2 composite
  • actions/upload-artifact v3.1.0 composite