gud_closure

https://github.com/werdna-spatial/gud_closure

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 2 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.8%) to scientific vocabulary

Last synced: 9 months ago · JSON representation ·

Repository

Basic Info

Host: GitHub
Owner: werdna-spatial
License: gpl-3.0
Language: Fortran
Default Branch: main
Size: 691 KB

Statistics

Stars: 2
Watchers: 1
Forks: 0
Open Issues: 0
Releases: 4

Created almost 3 years ago · Last pushed about 2 years ago

Metadata Files

Readme License Citation Support

GUD_closure

closure model

https://zenodo.org/doi/10.5281/zenodo.11193901

source code and configuration files for the implementation of the closure models under the Darwin-MITgcm.

Enclosed here are the necessary files to reproduce model results in our main paper, that need to be combined with the base Darwin-MITgcm code. Building and execution are dependent upon architecture used to run the code, and we refer to the Darwin-MITgcm documentation for guidance. Large input files for the MITGCM offline ECCO simulation and DARWIN model inputs will need to be acquired outside of github.

Models

Code was developed off the verification simulation monodeccov36+4.

Two versions are present

/verGmp2z1 contains the diamond model setup.

/verGmp2z2 contains the parallel model setup.

Contained within each setup:

/code - source code containing necessary modifications to the base Darwin-MITgcm model. Files can be added to the code directory of the above-mentioned Darwin-MITgcm

/input - configuration files, can be added to the input directory within a given MITgcm verification. Switching between linear and quadratic closure is accomplished by replacing the file dat.gud with data.gud.linear or data.gud.quad respectivily.

/scripts - scripts for compiling, running, and post-processing. These files are all setup specific. SLURM site specific submission scripts are included for reference.

Support

/Support contains scripts used to postprocess model output to prepare for analysis.

Paper_Data

/Paper Data contains utilized params and other files related to the paper published in <>. It conforms with the input files available within the input dir of the various models. Files generated here are the diagnostic files exported by the Darwin/MITgcm model runs.

Owner

Name: Eric
Login: werdna-spatial
Kind: user
Company: @UTK_MICRO

Repositories: 1
Profile: https://github.com/werdna-spatial

Citation (CITATION.cff)

authors:
  - family-names: Carr
    given-names: Eric
  - family-names: Talmy
    given-names: David
title: “Code to explore closures for different food web structure”
identifiers:
  - type: doi
    value: https://doi.org/10.5281/zenodo.11193902
date-released: 2024-03-25

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science