Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.7%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: structuralbioinformatics
- License: agpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 132 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 2 years ago
· Last pushed over 2 years ago
Metadata Files
Readme
License
Citation
README.md
Genopyc is a Python library for investigating the effect of genetic variants on the downstream pathways. It allows to perform various tasks such as retrieve the functional elements neighbouring genomic coordinates, investigating linkage disequilibrium (LD), annotate variants, retrieving genes affected by non coding variants and perform and visualize functional enrichment analysis.
To learn more on an application of genopyc library to investigate variants related to Intervertebral Disc Degeneration refer to the tutorial.
The documentation is available at readthedocs.
Owner
- Name: Structural BioInformatics
- Login: structuralbioinformatics
- Kind: organization
- Repositories: 14
- Profile: https://github.com/structuralbioinformatics
GitHub Events
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Dependencies
docs/requirements.txt
pypi
- myst_parser *
genopyc.egg-info/requires.txt
pypi
- dash *
- dash_cytoscape *
- gprofiler_official *
- igraph *
- networkx *
- numpy *
- pandas *
- requests *
- sphinx *
- wget *