proteomics-sample-metadata - v1.0.1

What's Changed

• changes in the specification. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/549
• Add PXD002370 by @daichengxin in https://github.com/bigbio/proteomics-sample-metadata/pull/548
• Please merge by @deeptijk in https://github.com/bigbio/proteomics-sample-metadata/pull/546
• Fixed instrument ontology by @daichengxin in https://github.com/bigbio/proteomics-sample-metadata/pull/553
• Added Biological and Technical replicates by @deeptijk in https://github.com/bigbio/proteomics-sample-metadata/pull/554
• Added new column by @deeptijk in https://github.com/bigbio/proteomics-sample-metadata/pull/555
• Metaproteomics - SDRF file for PXD005780 by @shengbokw in https://github.com/bigbio/proteomics-sample-metadata/pull/556
• Update README.adoc by @mlocardpaulet in https://github.com/bigbio/proteomics-sample-metadata/pull/559
• Major changes by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/561
• templates changed by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/562
• add PXD017602 and PXD001381 by @mlocardpaulet in https://github.com/bigbio/proteomics-sample-metadata/pull/558
• Some major changes by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/565
• minro changes by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/566
• minor changes by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/567
• Metabolomic KO Experiment with Factor by @mwang87 in https://github.com/bigbio/proteomics-sample-metadata/pull/544
• use cases by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/569
• added latest document link by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/570
• Add PXD011050 and PXD021874 by @StSchulze in https://github.com/bigbio/proteomics-sample-metadata/pull/557
• Fixed by @daichengxin in https://github.com/bigbio/proteomics-sample-metadata/pull/576
• Update PXD005507.sdrf.tsv by @KarinSchork in https://github.com/bigbio/proteomics-sample-metadata/pull/563
• Fixed MS2 analyzer type -> MS2 mass analyzer and update spiked-in by @daichengxin in https://github.com/bigbio/proteomics-sample-metadata/pull/577
• Correct SDRF of PXD000790 by @KarinSchork in https://github.com/bigbio/proteomics-sample-metadata/pull/578
• PXD005241-please merger the edited sdrf by @deeptijk in https://github.com/bigbio/proteomics-sample-metadata/pull/579
• Draft for data analysis metadata by @veitveit in https://github.com/bigbio/proteomics-sample-metadata/pull/573
• Fix the link to fged.org by @fabianegli in https://github.com/bigbio/proteomics-sample-metadata/pull/631
• Update README.adoc by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/645
• Minor updated and fixes by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/646
• changes in all EBI PRIDE urls by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/647
• PXD012986 project annotation by @julianu in https://github.com/bigbio/proteomics-sample-metadata/pull/644
• use https and cn TLD on iProX by @fabianegli in https://github.com/bigbio/proteomics-sample-metadata/pull/649
• use https instead of http by @fabianegli in https://github.com/bigbio/proteomics-sample-metadata/pull/648
• PXD011153 project annotation by @MiguelCos in https://github.com/bigbio/proteomics-sample-metadata/pull/643
• Two rice datasets annotated. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/666
• Created datasets examples folder for the specification. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/668
• docs by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/670
• changes for HUPO-PSI Final document. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/673
• Create sdrf-PXD014502.tsv by @alebremu in https://github.com/bigbio/proteomics-sample-metadata/pull/677
• Plasmodium annotations by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/695
• More documentation provided for the templates. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/709
• add SDRF PXD000228 by @juslm in https://github.com/bigbio/proteomics-sample-metadata/pull/675
• Please create PXD019291 folder for my PXD019291.sdrf.tsv by @deeptijk in https://github.com/bigbio/proteomics-sample-metadata/pull/663
• Pull request: SDRF files of matrisome studies from Naba lab by @Matrisome in https://github.com/bigbio/proteomics-sample-metadata/pull/708
• Changes in the Enzyme definition PSI accession added. [NOT MERGE YET] by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/710
• Update readthedocs by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/712
• readthedocs configuration CI/CD by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/713
• Changelog included, and folder repeated with docs removed. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/714
• Major changes in and fixes to all the annotated datasets. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/715
• continue improvements to fix datasets. by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/717
• fixed PXD011967 by @daichengxin in https://github.com/bigbio/proteomics-sample-metadata/pull/720
• Definition of Data acquisition method in the specification [DO NOT MERGE] by @ypriverol in https://github.com/bigbio/proteomics-sample-metadata/pull/718

New Contributors

• @shengbokw made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/556
• @mwang87 made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/544
• @fabianegli made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/631
• @MiguelCos made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/643
• @alebremu made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/677
• @juslm made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/675
• @Matrisome made their first contribution in https://github.com/bigbio/proteomics-sample-metadata/pull/708

Full Changelog: https://github.com/bigbio/proteomics-sample-metadata/compare/v1.0.1-beta...v1.0.1

Published by ypriverol almost 2 years ago

proteomics-sample-metadata - Beta release of MAGE-TAB for proteomics

Published by ypriverol about 5 years ago

proteomics-sample-metadata - SDRF-Proteomics: Sample and Data Relationship Format for Proteomics

The first beta release of SDRF-Proteomics included:

• SDRF-Proteomics specification, use cases, notations, conventions.
• List of Templates, checklists to validate different proteomics use cases.
• A list of ProteomeXchange annotated datasets.
• The List of contributors and tools supporting SDRF-Proteomics.
• Formal URL of the Project: https://github.com/bigbio/proteomics-metadata-standard

Published by ypriverol over 5 years ago