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profiling-handbook

Image-based Profiling Handbook

https://github.com/cytomining/profiling-handbook

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary

Keywords

cellprofiler cytomining guide handbook morphological-profiling

Keywords from Contributors

microscopy profiling
Last synced: 6 months ago · JSON representation ·

Repository

Image-based Profiling Handbook

Basic Info
Statistics
  • Stars: 10
  • Watchers: 2
  • Forks: 7
  • Open Issues: 5
  • Releases: 0
Topics
cellprofiler cytomining guide handbook morphological-profiling
Created almost 8 years ago · Last pushed 10 months ago
Metadata Files
Readme License Citation

README.md

Image-based Profiling Handbook

https://cytomining.github.io/profiling-handbook/

Owner

  • Name: cytomining
  • Login: cytomining
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this manual, please cite it as below."
title: "Broad Institute Imaging Platform Profiling Handbook"
url: "https://github.com/cytomining/profiling-handbook"
preferred-citation:
  type: manual
  authors:
  - family-names: "Cimini"
    given-names: "Beth A"
    orcid: "https://orcid.org/0000-0001-9640-9318"
  - family-names: "Way"
    given-names: "Gregory"
    orcid: "https://orcid.org/0000-0002-0503-9348"
  - family-names: "Becker"
    given-names: "Tim"
    orcid: "https://orcid.org/0000-0001-9615-0799"
  - family-names: "Weisbart"
    given-names: "Erin"
    orcid: "https://orcid.org/0000-0002-6437-2458"
  - family-names: "Chandrasekaran"
    given-names: "Srinivas Niranj"
    orcid:  "https://orcid.org/0000-0001-8874-9988"
  - family-names: "Tromans-Coia"
    given-names: "Callum"
    orcid: "https://orcid.org/0000-0002-5518-8915"
  - family-names: "Shafqat Abbasi"
    given-names: "Hamdah"
    orcid: "https://orcid.org/0000-0003-0237-0323"  
  - family-names: "Carpenter"
    given-names: "Anne"
    orcid: "https://orcid.org/0000-0003-1555-8261"
  - family-names: "Singh"
    given-names: "Shantanu"
    orcid: "https://orcid.org/0000-0003-3150-3025"
  title: "Broad Institute Imaging Platform Profiling Handbook"
  url: "https://github.com/cytomining/profiling-handbook"

GitHub Events

Total
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 2
Last Year
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 2

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 123
  • Total Committers: 5
  • Avg Commits per committer: 24.6
  • Development Distribution Score (DDS): 0.577
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Shantanu Singh s****h@b****g 52
Beth Cimini b****7 46
gwaygenomics g****y@g****m 22
Erin Weisbart 5****t 2
callum-jpg 2****g 1
Committer Domains (Top 20 + Academic)
broadinstitute.org: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 29
  • Total pull requests: 46
  • Average time to close issues: almost 2 years
  • Average time to close pull requests: about 1 month
  • Total issue authors: 4
  • Total pull request authors: 6
  • Average comments per issue: 2.41
  • Average comments per pull request: 1.2
  • Merged pull requests: 43
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • bethac07 (17)
  • shntnu (9)
  • gwaybio (2)
  • cells2numbers (1)
Pull Request Authors
  • shntnu (21)
  • bethac07 (12)
  • gwaybio (10)
  • ErinWeisbart (2)
  • callum-jpg (1)
  • niranjchandrasekaran (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • bookdown * imports
.github/workflows/deploy.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • peaceiris/actions-gh-pages v3.6.1 composite