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https://github.com/animesh/covidpred

Machine Learning-based prediction of COVID-19 diagnosis based on symptoms

https://github.com/animesh/covidpred

Science Score: 23.0%

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Repository

Machine Learning-based prediction of COVID-19 diagnosis based on symptoms

Basic Info
  • Host: GitHub
  • Owner: animesh
  • Default Branch: master
  • Size: 3.46 MB
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Fork of nshomron/covidpred
Created about 5 years ago · Last pushed over 5 years ago

https://github.com/animesh/covidpred/blob/master/ 

## A COVID-19 Prediction Model Using Symptoms
From: [Machine learning-based prediction of COVID-19 diagnosis based on symptoms](https://www.nature.com/articles/s41746-020-00372-6), npj Digital Medicine; [doi:10.1038/s41746-020-00372-6](https://doi.org/10.1038/s41746-020-00372-6)

Previously: [COVID-19 diagnosis prediction by symptoms of tested individuals: a machine learning approach](https://www.medrxiv.org/content/10.1101/2020.05.07.20093948v2), medRxiv; [doi:10.1101/2020.05.07.20093948](https://doi.org/10.1101/2020.05.07.20093948)

## Model Predictors and Exact Variable Names (True = 1, False = 0)
* **Age over 60** - Age_60
* **Sex** - Male (Male=1, Female=0)
* **Cough** - Cough
* **Shortness of breath** - Shortness_of_breath
* **Fever** - Fever
* **Sore throat** - Sore_throat
* **Headache** - Headache
* **Contact with a confirmed individual** - Contact_with_confirmed



## Model Outcome
The probability of being diagnosed with a COVID-19 infection.


## Use
1. Import lgbm_model_*.txt using LightGBM 2.3.1 on Python 3.6.

2. Predict using your data.

## Files in this repository

* **lgbm_model_all_features.txt** - The predictor that uses all 8 features
* **lgbm_model_balanced_features.txt** - The predictor that uses only balanced symptoms
* **hyperparameters.txt** - The hyperparameters used by lightGBM
* **data/corona_tested_individuals_ver_0083.english.csv.zip** - The tested individuals dataset downloaded from https://data.gov.il/dataset/covid-19 on November 15, 2020 and translated into English
* **data/corona_tested_individuals_ver_006.english.csv.zip** - The tested individuals dataset downloaded from https://data.gov.il/dataset/covid-19 on May 4, 2020 and translated into English. This is the version we used for the analysis.

Owner

  • Name: Ani
  • Login: animesh
  • Kind: user
  • Location: Norway
  • Company: Norwegian University of Science and Technology

A medical graduate from Delhi University with post-graduation in bioinformatics from Jawaharlal Nehru University, India.

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