https://github.com/animesh/cmgm
Comprehensive mouse gut metagenome collection
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (2.3%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
Comprehensive mouse gut metagenome collection
Basic Info
- Host: GitHub
- Owner: animesh
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.65 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Fork of trajkovski-lab/CMMG
Created almost 5 years ago
· Last pushed almost 5 years ago
https://github.com/animesh/CMGM/blob/main/
# Comprehensive Mouse Gut Metagenome (CMGM) catalog > Comprehensive mouse gut metagenome catalog reveals major difference to the human counterpart. Kieser, S., Zdobnov, E. M. & Trajkovski, M. bioRxiv 2021.03.18.435958 (2021). doi:[10.1101/2021.03.18.435958](https://doi.org/10.1101/2021.03.18.435958) Here is a [jupyter notebook](notebooks/Analyze-cold-adapted-microbiota.ipynb) that shows how CMGM can be used for the analysis of mouse metagenome data.   The same code can be used for the analysis of human metagenome data, by using our [functionally annotions](https://ezmeta.unige.ch/CMGM/v1/Human_data/) of the Unified human gastrointestinal genome collection.
Owner
- Name: Ani
- Login: animesh
- Kind: user
- Location: Norway
- Company: Norwegian University of Science and Technology
- Website: https://www.fuzzylife.org
- Twitter: animesh1977
- Repositories: 749
- Profile: https://github.com/animesh
A medical graduate from Delhi University with post-graduation in bioinformatics from Jawaharlal Nehru University, India.