https://github.com/animesh/ccprofiler
Analysis of co-fractionation MS datasets
Science Score: 13.0%
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Analysis of co-fractionation MS datasets
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# CCprofiler
*CCprofiler* is an open-source R-package for the analysis of co-fractionation MS datasets, for example SEC-SWATH-MS. It offers a collection of R functions for quality control and filtering, protein quantificaion, protein- and complex-centric data analysis and vsualization. For detailed description of the functions please see the vignette that comes with the software.
## Install
Install the dependencies:
```
cran_deps <- c('proxy', 'doSNOW', 'igraph', 'pracma', 'Rmpfr')
install.packages(cran_deps)
BiocManager::install("qvalue")
```
## Citing CCprofiler
If you use CCprofiler in your research, please cite our publication in Molecular Systems Biology describing the workflow.
Moritz Heusel*, Isabell Bludau*, George Rosenberger, Robin Hafen, Max Frank, Amir Banaei-Esfahani, Ben Collins, Matthias Gstaiger, Ruedi Aebersold
Complex-centric proteome profiling by SEC-SWATH-MS
Mol Syst Biol (2019)15:e8438
DOI: https://doi.org/10.15252/msb.20188438
Owner
- Name: Ani
- Login: animesh
- Kind: user
- Location: Norway
- Company: Norwegian University of Science and Technology
- Website: https://www.fuzzylife.org
- Twitter: animesh1977
- Repositories: 749
- Profile: https://github.com/animesh
A medical graduate from Delhi University with post-graduation in bioinformatics from Jawaharlal Nehru University, India.