https://github.com/annakrystalli/rrcompendium

Partial Reproduction of Boettiger Ecology Letters 2018;21:1255-1267

https://github.com/annakrystalli/rrcompendium

Repository

Partial Reproduction of Boettiger Ecology Letters 2018;21:1255-1267

README.Rmd

---
output: github_document
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
# Please put your title here to include it in the file below.
Title <- "From noise to knowledge: how randomness generates novel phenomena and reveals information"
```

# rrcompendium

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh///master?urlpath=rstudio)

This repository contains the data and code for our paper:

> Krystalli A., (2025). _`r Title`_. Ecology Letters 

Our pre-print is online here:

> Krystalli A., (2025). _`r Title`_. Ecology Letters, Accessed `r format(Sys.Date(), "%d %b %Y")`. Online at 


### How to cite

Please cite this compendium as:

> Krystalli A., (`r format(Sys.Date(), "%Y")`). _Compendium of R code and data for `r Title`_. Accessed `r format(Sys.Date(), "%d %b %Y")`. Online at 

## Contents

The **analysis** directory contains:

  - [:file\_folder: paper](/analysis/paper): Quarto source document
    for manuscript. Includes code to reproduce the figures and tables
    generated by the analysis. It also has a rendered version,
    `paper.pdf`, suitable for reading (the code is replaced by figures
    and tables in this file)
  - [:file\_folder: data](/analysis/data): Data used in the analysis.
  - [:file\_folder: figures](/analysis/figures): Plots and other
    illustrations
  - [:file\_folder:
    supplementary-materials](/analysis/supplementary-materials):
    Supplementary materials including notes and other documents
    prepared and collected during the analysis.

## How to run in your browser or download and run locally

This research compendium has been developed using the statistical programming
language R. To work with the compendium, you will need
installed on your computer the [R software](https://cloud.r-project.org/)
itself and optionally [RStudio Desktop](https://rstudio.com/products/rstudio/download/).

You can download the compendium as a zip from from this URL:
[master.zip](/archive/master.zip). After unzipping:
- open the `.Rproj` file in RStudio
- run `renv::restore()` to ensure you have the packages this analysis depends on (also listed in the
[DESCRIPTION](/DESCRIPTION) file). You may need to install `renv` first with `install.packages("renv")`.
- finally, open `analysis/paper/paper.Rmd` and knit to produce the `paper.pdf`, or run `rmarkdown::render("analysis/paper/paper.qmd")` in the R console

### Licenses

**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)

**Code :** See the [DESCRIPTION](DESCRIPTION) file

**Data :** [CC-0](http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse

### Contributions

We welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.

Owner

GitHub Events

Issues and Pull Requests

Last synced: about 1 year ago