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Recent Releases of https://github.com/antsx/antspy

https://github.com/antsx/antspy - Aiouea

Apologies for the lack of Windows wheels on the previous release. This patch release restores Windows distribution along with other changes to make our uploads to PyPI more reliable.

What's Changed

  • Fix def grad windows by @cookpa in https://github.com/ANTsX/ANTsPy/pull/828
  • Pypi workflow by @cookpa in https://github.com/ANTsX/ANTsPy/pull/829

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.6.0...v0.6.1

- Python
Published by cookpa 12 months ago

https://github.com/antsx/antspy - Aesculus

Quite a few changes in this one, including SimpleITK compatibility, optimizations to improve performance in registration, and bug fixes for Jacobian calculation.

The main new functionality is the label image registration from @ntustison

Thanks to all contributors

What's Changed

  • COMP: version bump by @cookpa in https://github.com/ANTsX/ANTsPy/pull/722
  • WIP: Fix nanobind memory leaks by @cookpa in https://github.com/ANTsX/ANTsPy/pull/734
  • DOC: explain reg transform options by @cookpa in https://github.com/ANTsX/ANTsPy/pull/735
  • DOC: example typo by @cookpa in https://github.com/ANTsX/ANTsPy/pull/736
  • Build template: delete temporary files by @dyollb in https://github.com/ANTsX/ANTsPy/pull/731
  • ENH: Throw exception if image cannot be read by @cookpa in https://github.com/ANTsX/ANTsPy/pull/738
  • add SimpleITK.Image to ANTsImage conversion by @dyollb in https://github.com/ANTsX/ANTsPy/pull/726
  • DOC: initial transform option by @cookpa in https://github.com/ANTsX/ANTsPy/pull/739
  • ENH: Add label iamge registration and tests. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/743
  • Make precision (--float) configurable for registration by @evertdeman in https://github.com/ANTsX/ANTsPy/pull/741
  • ENH: Test reg precision by @cookpa in https://github.com/ANTsX/ANTsPy/pull/744
  • Update mac runner by @cookpa in https://github.com/ANTsX/ANTsPy/pull/745
  • BUG: Python str objects don't have astype() by @cookpa in https://github.com/ANTsX/ANTsPy/pull/746
  • ENH: Prevent pandas type conversion warning by @cookpa in https://github.com/ANTsX/ANTsPy/pull/748
  • COMP: Bump ITK for Windows by @cookpa in https://github.com/ANTsX/ANTsPy/pull/750
  • ENH: Change variable name by @ntustison in https://github.com/ANTsX/ANTsPy/pull/751
  • ENH: Add functionality for specifying def. xfrm by @ntustison in https://github.com/ANTsX/ANTsPy/pull/752
  • WIP: Don't do COM initialization for "syn-only" reg by @cookpa in https://github.com/ANTsX/ANTsPy/pull/757
  • DOC: Windows runtime requirements by @cookpa in https://github.com/ANTsX/ANTsPy/pull/759
  • DOC: Update conf.py by @cookpa in https://github.com/ANTsX/ANTsPy/pull/756
  • ENH: Add explicit identity linear transform. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/761
  • Allow numpy datatypes in image_clone by @cookpa in https://github.com/ANTsX/ANTsPy/pull/765
  • Neatened things up to be more reader-friendly by @DeanTM in https://github.com/ANTsX/ANTsPy/pull/766
  • ENH: Change gradient and radius defaults. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/770
  • Turn off hard-coded histogram matching in registration by @cookpa in https://github.com/ANTsX/ANTsPy/pull/768
  • No swap numpy dims by @cookpa in https://github.com/ANTsX/ANTsPy/pull/774
  • fix: vertical line (xyz-lines) in sagittal image of plot_ortho is flipped by @sai8951 in https://github.com/ANTsX/ANTsPy/pull/762
  • fix: vertical line in sagittal view is flipped by @sai8951 in https://github.com/ANTsX/ANTsPy/pull/763
  • Fix mac wheels by @cookpa in https://github.com/ANTsX/ANTsPy/pull/749
  • BUG: Fix some logic issues. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/777
  • ENH: Update ITK Tag. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/778
  • ENH: Prevent attempts to iterate over antsImage by @cookpa in https://github.com/ANTsX/ANTsPy/pull/780
  • Update ants by @cookpa in https://github.com/ANTsX/ANTsPy/pull/782
  • CI: Python 3.13 wheels by @cookpa in https://github.com/ANTsX/ANTsPy/pull/785
  • Label geom test by @cookpa in https://github.com/ANTsX/ANTsPy/pull/784
  • CI: Build all the wheels weekly by @cookpa in https://github.com/ANTsX/ANTsPy/pull/786
  • STYLE: Clean up old build files by @cookpa in https://github.com/ANTsX/ANTsPy/pull/788
  • COMP: Update Windows ITK to match others by @cookpa in https://github.com/ANTsX/ANTsPy/pull/789
  • DOC: Registration usage by @cookpa in https://github.com/ANTsX/ANTsPy/pull/792
  • BUG: Fix logic by @ntustison in https://github.com/ANTsX/ANTsPy/pull/793
  • ENH: Subsume typeOfLinearTransform in initialTransforms. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/794
  • COMP: Nanobind version limit for older Python by @cookpa in https://github.com/ANTsX/ANTsPy/pull/796
  • Probable typo in docstring by @arovai in https://github.com/ANTsX/ANTsPy/pull/799
  • CI: Send all wheels to pypi by @cookpa in https://github.com/ANTsX/ANTsPy/pull/800
  • ENH: Migrate ANTsPyNet functionality by @ntustison in https://github.com/ANTsX/ANTsPy/pull/802
  • DOC: Adding all to get functions added to documentation by @cookpa in https://github.com/ANTsX/ANTsPy/pull/804
  • COMP: Install SimpleITK to test by @cookpa in https://github.com/ANTsX/ANTsPy/pull/805
  • More sitk imports and tests by @cookpa in https://github.com/ANTsX/ANTsPy/pull/806
  • CI: Pin simpleitk to 2.4.1 for Linux, seems 2.5.0 doesn't build by @cookpa in https://github.com/ANTsX/ANTsPy/pull/807
  • ENH: one-hot xfrms by @ntustison in https://github.com/ANTsX/ANTsPy/pull/808
  • ENH: Remove deprecated variable. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/809
  • COMP: Allow modern numpy by @cookpa in https://github.com/ANTsX/ANTsPy/pull/816
  • added conda installation instructions by @sarthakpati in https://github.com/ANTsX/ANTsPy/pull/815
  • DOC: Updating broken links in README by @lankabelgezogen in https://github.com/ANTsX/ANTsPy/pull/817
  • ENH: Add polar decomposition and convergence monitoring. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/819
  • ENH: Non-symmetrization. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/820
  • COMP: don't use latest scipy by @cookpa in https://github.com/ANTsX/ANTsPy/pull/825
  • Jacobian fixes by @cookpa in https://github.com/ANTsX/ANTsPy/pull/823
  • ENH: Expand jacobian tests by @cookpa in https://github.com/ANTsX/ANTsPy/pull/826
  • COMP: Version bump for release by @cookpa in https://github.com/ANTsX/ANTsPy/pull/801

New Contributors

  • @dyollb made their first contribution in https://github.com/ANTsX/ANTsPy/pull/731
  • @evertdeman made their first contribution in https://github.com/ANTsX/ANTsPy/pull/741
  • @DeanTM made their first contribution in https://github.com/ANTsX/ANTsPy/pull/766
  • @sai8951 made their first contribution in https://github.com/ANTsX/ANTsPy/pull/762
  • @arovai made their first contribution in https://github.com/ANTsX/ANTsPy/pull/799
  • @sarthakpati made their first contribution in https://github.com/ANTsX/ANTsPy/pull/815
  • @lankabelgezogen made their first contribution in https://github.com/ANTsX/ANTsPy/pull/817

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.5.4...v0.6.0

- Python
Published by cookpa 12 months ago

https://github.com/antsx/antspy - Acer

Improved compile time optimization makes speed of ANTsPy operations much closer to the comparable command-line ANTs call.

Various bug fixes including adding ants.ANTsImage back to the namespace.

What's Changed

  • ENH: Add ants.ANTsImage back to namespace by @cookpa in https://github.com/ANTsX/ANTsPy/pull/700
  • CI: Push more wheels to pypi, document Mac compatibility issues by @cookpa in https://github.com/ANTsX/ANTsPy/pull/697
  • COMP: downgrade numpy for arm64 by @cookpa in https://github.com/ANTsX/ANTsPy/pull/702
  • ENH: Default to 2 voxel radius for denoise_image.py by @cookpa in https://github.com/ANTsX/ANTsPy/pull/704
  • PERF: more optimization at compile time by @cookpa in https://github.com/ANTsX/ANTsPy/pull/705
  • DISP: Address pd warning. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/713
  • BUG: labelimagecentroids only worked with sequential labels 1..N by @cookpa in https://github.com/ANTsX/ANTsPy/pull/714
  • DOC: remove reference to ants/lib which no longer exists by @cookpa in https://github.com/ANTsX/ANTsPy/pull/720
  • BUG: Fix slicing. More consistent with numpy by @cookpa in https://github.com/ANTsX/ANTsPy/pull/721

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.5.3...v0.5.4

- Python
Published by cookpa over 1 year ago

https://github.com/antsx/antspy - Sassafras

Big computational changes in this release: the move from pybind11 to nanobind massively reduces wheel size, which makes for faster builds and will enable us to keep more releases on pypi.

What's Changed

  • ENH: support resampling multi-channel images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/609
  • DOC: document reg initial transform by @cookpa in https://github.com/ANTsX/ANTsPy/pull/616
  • update tests; remove contrib by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/618
  • add more tests by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/619
  • Add tests; Remove labelimage + invariant image similarity by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/620
  • ENH: move c++ wrapping from pybind11 to nanobind by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/621
  • CLEAN: remove unused top files and update readme by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/623
  • FIX: overlay plot background is masked by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/631
  • ENH: Update CI and scikit-build-core by @cookpa in https://github.com/ANTsX/ANTsPy/pull/628
  • ENH: initialize ANTsImage with pointer only by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/634
  • ENH: check for transform instance before writing to file by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/636
  • Ants read warp transform by @cookpa in https://github.com/ANTsX/ANTsPy/pull/638
  • ENH: simpler imports, image decorator, and better code organization by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/637
  • DOCS: update docs by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/640
  • ENH: Verbose tests by @cookpa in https://github.com/ANTsX/ANTsPy/pull/639
  • FIX: remove listfunc from `matrixtoimage´ by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/642
  • DOC: Clarify return type of apply_transforms by @cookpa in https://github.com/ANTsX/ANTsPy/pull/644
  • FIX: image indexing returns image where possible by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/645
  • ENH: Threshold mask in imagestomatrix by @cookpa in https://github.com/ANTsX/ANTsPy/pull/646
  • ENH: Hoping to stop the windows access violation errors by @cookpa in https://github.com/ANTsX/ANTsPy/pull/647
  • ENH: support 2d images on slice_image function by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/649
  • FIX: newimagelike arg typo by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/650
  • FIX: compose multi type transforms by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/652
  • Fix: raise for bad slice axis; ENH: support slicing vector images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/653
  • CI: Trying to use bash on windows by @cookpa in https://github.com/ANTsX/ANTsPy/pull/654
  • ENH: squeeze data_weights if necessary by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/656
  • ENH: support channels first for vector images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/657
  • DOC: Fix license by @cookpa in https://github.com/ANTsX/ANTsPy/pull/659
  • ENH: support pickle and deepcopy for images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/658
  • BUG: Return variable. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/661
  • TESTS: add test for bspline zeros bug by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/662
  • TESTS: expand tests for ops and plotting by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/663
  • FIX: cast unsupported numpy dtypes in ants.from_numpy() by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/665
  • ENH: crop vector images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/669
  • COMP: Docker build suddenly stopped working, needs classic solver by @cookpa in https://github.com/ANTsX/ANTsPy/pull/673
  • BUG: Remove deprecated np.math by @cookpa in https://github.com/ANTsX/ANTsPy/pull/674
  • CI: Update action versions by @cookpa in https://github.com/ANTsX/ANTsPy/pull/675
  • CI: Don't push PRs to dockerhub by @cookpa in https://github.com/ANTsX/ANTsPy/pull/677
  • ENH: Update cibuildwheel linux by @cookpa in https://github.com/ANTsX/ANTsPy/pull/679
  • WIP: import hessian objectness itk filter. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/681
  • ENH: Add hessian objectness test. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/682
  • BUG: fix paste error from R, arg is typeoftransform by @cookpa in https://github.com/ANTsX/ANTsPy/pull/687
  • Update testcoreants_image.py by @cookpa in https://github.com/ANTsX/ANTsPy/pull/689
  • fix typo in affine_initializer() by @FeynmanDNA in https://github.com/ANTsX/ANTsPy/pull/690
  • CI: Update Dockerfile by @cookpa in https://github.com/ANTsX/ANTsPy/pull/691
  • Fix apply transform to image by @cookpa in https://github.com/ANTsX/ANTsPy/pull/692

New Contributors

  • @FeynmanDNA made their first contribution in https://github.com/ANTsX/ANTsPy/pull/690

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.5.2...v0.5.3

- Python
Published by cookpa almost 2 years ago

https://github.com/antsx/antspy - Alder

Fixes incorrect version information in version 0.5.1. Changelog here shown relative to 0.5.0.

What's Changed

  • ENH: Multiple CI changes by @cookpa in https://github.com/ANTsX/ANTsPy/pull/580
  • Use double precision by default in apply_transforms computations by @cookpa in https://github.com/ANTsX/ANTsPy/pull/585
  • BUG: Overly strict floating point test by @cookpa in https://github.com/ANTsX/ANTsPy/pull/587
  • ENH: Reset index after ITK filters, keep ITK object and python interface consistent by @cookpa in https://github.com/ANTsX/ANTsPy/pull/588
  • ENH: Bump ITK and ANTs, initialize all memory allocated for images by @cookpa in https://github.com/ANTsX/ANTsPy/pull/590
  • ENH: Update coveralls version by @cookpa in https://github.com/ANTsX/ANTsPy/pull/592
  • ENH: Use XML for coverage by @cookpa in https://github.com/ANTsX/ANTsPy/pull/593
  • ENH: Test coverage on PRs by @cookpa in https://github.com/ANTsX/ANTsPy/pull/595
  • BUG: Cache key had wrong path to config scripts by @cookpa in https://github.com/ANTsX/ANTsPy/pull/599
  • ENH: Version bump to fix imath segfault by @cookpa in https://github.com/ANTsX/ANTsPy/pull/598
  • ENH: Add Mattes. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/603
  • ENH: Add masked/bspline fitting variant of Nyul histogram matching. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/607
  • FIX: remove plot_ortho return statement by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/608

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.5.0...v0.5.2

- Python
Published by cookpa about 2 years ago

https://github.com/antsx/antspy - Birkenshaw

This is a bug fix release. ITK and ANTs are updated to fix intermittent errors caused by uninitialized memory (see #579 and #583).

The apply_transforms function now uses double precision by default, to avoid lossy resampling of Allen brain atlas labels.

What's Changed

  • ENH: Multiple CI changes by @cookpa in https://github.com/ANTsX/ANTsPy/pull/580
  • Use double precision by default in apply_transforms computations by @cookpa in https://github.com/ANTsX/ANTsPy/pull/585
  • BUG: Overly strict floating point test by @cookpa in https://github.com/ANTsX/ANTsPy/pull/587
  • ENH: Reset index after ITK filters, keep ITK object and python interface consistent by @cookpa in https://github.com/ANTsX/ANTsPy/pull/588
  • ENH: Bump ITK and ANTs, initialize all memory allocated for images by @cookpa in https://github.com/ANTsX/ANTsPy/pull/590
  • ENH: Update coveralls version by @cookpa in https://github.com/ANTsX/ANTsPy/pull/592
  • ENH: Use XML for coverage by @cookpa in https://github.com/ANTsX/ANTsPy/pull/593
  • ENH: Test coverage on PRs by @cookpa in https://github.com/ANTsX/ANTsPy/pull/595
  • BUG: Cache key had wrong path to config scripts by @cookpa in https://github.com/ANTsX/ANTsPy/pull/599
  • ENH: Version bump to fix imath segfault by @cookpa in https://github.com/ANTsX/ANTsPy/pull/598

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.5.0...v0.5.1

- Python
Published by cookpa about 2 years ago

https://github.com/antsx/antspy - Meadow

ITK and ANTs library updates, and many improvements including boosts to test coverage, visualization fixes, and documentation.

Summary by @ncullen93:

improved testing minor bug fixes minor documentation improvements upgrade to latest ANTs and ITK version removed deprecated code (VTK-related visualization) Things to accomplish during v0.5.x

rework docs and tutorials (to ants.dev) reduce build size refactor ants.plot function to be simpler speed up import time (by deferring imports?)

What's Changed

  • Affine updates by @seogier in https://github.com/ANTsX/ANTsPy/pull/505
  • STYLE: Remove unused CLI mangling code by @cookpa in https://github.com/ANTsX/ANTsPy/pull/516
  • COMP: Add support for Python 3.12 by @ravnoor in https://github.com/ANTsX/ANTsPy/pull/510
  • Update configure_ANTsPy.sh by @crossmanith in https://github.com/ANTsX/ANTsPy/pull/523
  • ENH: allow setting of fixed_parameters when creating a transform by @cookpa in https://github.com/ANTsX/ANTsPy/pull/526
  • DOC: Update aff_sampling docstring in interface.py by @dzenanz in https://github.com/ANTsX/ANTsPy/pull/529
  • make interpolation case-insensitive by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/534
  • Explicit imports by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/533
  • update reg docs by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/535
  • remove all RPACKAGELIB refs by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/537
  • ENH: Histogram equalization by @ntustison in https://github.com/ANTsX/ANTsPy/pull/539
  • Code cov by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/541
  • ENH: allow workflow dispatch by @cookpa in https://github.com/ANTsX/ANTsPy/pull/543
  • ENH: Don't need extra parameter for branch by @cookpa in https://github.com/ANTsX/ANTsPy/pull/545
  • rightside ops by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/547
  • ENH: Support different segmentation labels in kelly_kapowski by @cookpa in https://github.com/ANTsX/ANTsPy/pull/548
  • Test viz png by @cookpa in https://github.com/ANTsX/ANTsPy/pull/551
  • ENH: More specific error messages if atropos fails by @cookpa in https://github.com/ANTsX/ANTsPy/pull/556
  • DOC: Update issue template by @cookpa in https://github.com/ANTsX/ANTsPy/pull/558
  • ENH: ARM64 builds by @cookpa in https://github.com/ANTsX/ANTsPy/pull/557
  • ENH: Coordinate with other n4 usage. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/560
  • fix small doc typo by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/563
  • fix issue with plotting negative-sum images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/562
  • change required slice_image args by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/565
  • COMP: Debugging output in runners by @cookpa in https://github.com/ANTsX/ANTsPy/pull/564
  • BUG: Check for zero image in plot by @cookpa in https://github.com/ANTsX/ANTsPy/pull/566
  • ENH: avoid kelly_kapowski returning GMP by @cookpa in https://github.com/ANTsX/ANTsPy/pull/561
  • Add more plotting tests by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/568
  • test plot grid and support 2d images by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/569
  • allow decrop_image to be chained by @ncullen93 in https://github.com/ANTsX/ANTsPy/pull/571

New Contributors

  • @crossmanith made their first contribution in https://github.com/ANTsX/ANTsPy/pull/523
  • @dzenanz made their first contribution in https://github.com/ANTsX/ANTsPy/pull/529

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.4.2...v0.5.0

- Python
Published by cookpa over 2 years ago

https://github.com/antsx/antspy - Cascade

What's Changed

  • Generate python 3.11 wheels by @tfmoraes in https://github.com/ANTsX/ANTsPy/pull/445
  • WIP: attach wheels to releases by @cookpa in https://github.com/ANTsX/ANTsPy/pull/444
  • Support for a slightly more flexible use of masks by @azylbertal in https://github.com/ANTsX/ANTsPy/pull/450
  • ENH: Registration masks use all voxels != 0 by @cookpa in https://github.com/ANTsX/ANTsPy/pull/456
  • ENH: default n3 / n4 spline mesh size of 1 by @cookpa in https://github.com/ANTsX/ANTsPy/pull/457
  • updated build_template with affine shape correction by @richardbeare in https://github.com/ANTsX/ANTsPy/pull/459
  • ENH: Add thin-plate splines. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/460
  • BUG: Typo by @ntustison in https://github.com/ANTsX/ANTsPy/pull/462
  • ENH: Make pcasl available in getantsdata by @ntustison in https://github.com/ANTsX/ANTsPy/pull/465
  • Rewrite Windows tests by @cookpa in https://github.com/ANTsX/ANTsPy/pull/469
  • Feat/cbar for ortho plot by @gladomat in https://github.com/ANTsX/ANTsPy/pull/473
  • ENH: Support vector images stored as double by @cookpa in https://github.com/ANTsX/ANTsPy/pull/474
  • ENH: applytransforms: dont force compose as nii.gz by @MSco in https://github.com/ANTsX/ANTsPy/pull/476
  • ENH: Add initial velocity field capabilities. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/477
  • Similarity option typo made "ANTSNeighborhoodCorrelation" unreachable by @cookpa in https://github.com/ANTsX/ANTsPy/pull/480
  • COMP: Migrate RTD to new config by @cookpa in https://github.com/ANTsX/ANTsPy/pull/483
  • ENH: Allow multiple initial transforms by @cookpa in https://github.com/ANTsX/ANTsPy/pull/488
  • ENH: Update ANTs git tag. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/489
  • corrected docstrings for affine transformations by @seogier in https://github.com/ANTsX/ANTsPy/pull/492

New Contributors

  • @azylbertal made their first contribution in https://github.com/ANTsX/ANTsPy/pull/450
  • @richardbeare made their first contribution in https://github.com/ANTsX/ANTsPy/pull/459
  • @gladomat made their first contribution in https://github.com/ANTsX/ANTsPy/pull/473
  • @MSco made their first contribution in https://github.com/ANTsX/ANTsPy/pull/476

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.3.8...v0.4.2

- Python
Published by cookpa over 2 years ago

https://github.com/antsx/antspy - Price

What's Changed

  • Invert field by @ntustison in https://github.com/ANTsX/ANTsPy/pull/411
  • WIP: Add xfrm option for BRATs pipeline. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/407
  • ENH: Compose fields. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/412
  • WIP: SyN landmarks. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/413
  • ENH: Integrate velocity field. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/414
  • WIP: Time-varying transform for landmarks. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/415
  • ENH: Add verbose and additional outputs. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/416
  • ENH: Change collapse strategy. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/419
  • ENH: Add collapse strategy option. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/420
  • native arm64 docker images + wheel builds for linux_aarch64 and macosx_arm64 using Cirrus CI by @ravnoor in https://github.com/ANTsX/ANTsPy/pull/424
  • COMP: Add support for python 3.11, remove 3.6 from CI build wheels by @cookpa in https://github.com/ANTsX/ANTsPy/pull/426
  • WIP: Add time-varying point set transform fitting. by @ntustison in https://github.com/ANTsX/ANTsPy/pull/433
  • ENH: Separate wheel artifacts by @cookpa in https://github.com/ANTsX/ANTsPy/pull/440
  • ENH: Read / Write windows pointers by @cookpa in https://github.com/ANTsX/ANTsPy/pull/442

Full Changelog: https://github.com/ANTsX/ANTsPy/compare/v0.3.4...v0.3.8

- Python
Published by cookpa about 3 years ago

https://github.com/antsx/antspy - embellished

- Python
Published by stnava over 3 years ago

https://github.com/antsx/antspy - ML: See pip for new releases

pip install antspyx

https://pypi.org/project/antspyx/

the file antspyx-0.2.0-cp37-cp37m-linux_x86_64.whl is for the ANTsPy docker container

- Python
Published by stnava almost 7 years ago

https://github.com/antsx/antspy - Layne

- Python
Published by stnava about 7 years ago

https://github.com/antsx/antspy - Mara

Bug fixes for jointLabelFusion, atropos and TruncateIntensity.

Many performance improvements in the registration framework.

Tested on linux (ubuntu 18.04) and osx (Apple LLVM version 9.1.0 (clang-902.0.39.2))

- Python
Published by stnava over 7 years ago

https://github.com/antsx/antspy - "Vasagatan"

Latest release. Very well-tested. Installation issues have been simplified.

- Python
Published by ncullen93 about 8 years ago

https://github.com/antsx/antspy - Weekly Release

This release contains the most up-to-date binaries of the package.

- Python
Published by ncullen93 over 8 years ago

https://github.com/antsx/antspy - v0.1.4 - "Sansom"

Release Notes:

  • improved testing with 90% test coverage
  • VTK build added so ants visualization functions now work
  • fix memory leak and remove need for garbage collection as in ANTsR by adding finalizer to py::capsule
  • add (at least runtime) tests for all functionality
  • added automatic travis build/test process for linux and mac with ITK caching
  • add read-the-docs website
  • added project source distribution to PyPI
  • added wheels for very fast (< 1min) installation from scratch
  • improved ANTs and ITK build process
  • reduced repo size by having no third party code
  • renamed library functions to LOCAL_ and WRAP_
  • improved WRAP process
  • removed cpp ANTsImage class so image.pointer is all that is passed to/from cpp
  • improved import process by not calling lib module directly (only through utils)
  • added better interface/initialization for ANTsImage class

- Python
Published by ncullen93 over 8 years ago

https://github.com/antsx/antspy - v0.1.3 - "Chestnut"

To install, download the .whl file and run pip install filename.whl - replacing "filename" with the actual filename, of course.

- Python
Published by ncullen93 over 8 years ago