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elapid

elapid: Species distribution modeling tools for Python - Published in JOSS (2023)

https://github.com/earth-chris/elapid

Science Score: 98.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

biodiversity-informatics biogeography geospatial maxent niche-modelling species-distribution-modelling

Scientific Fields

Political Science Social Sciences - 90% confidence
Artificial Intelligence and Machine Learning Computer Science - 83% confidence
Last synced: 4 months ago · JSON representation ·

Repository

Species distribution modeling tools, including a python implementation of Maxent

Basic Info
  • Host: GitHub
  • Owner: earth-chris
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage: https://elapid.org
  • Size: 6.39 MB
Statistics
  • Stars: 63
  • Watchers: 8
  • Forks: 11
  • Open Issues: 4
  • Releases: 11
Topics
biodiversity-informatics biogeography geospatial maxent niche-modelling species-distribution-modelling
Created almost 5 years ago · Last pushed 11 months ago
Metadata Files
Readme Contributing License Citation

README.md

docs/index.md

Owner

  • Name: Christopher Anderson
  • Login: earth-chris
  • Kind: user
  • Location: San Francisco, CA
  • Company: @planetlabs

ecology | space | design

JOSS Publication

elapid: Species distribution modeling tools for Python
Published
April 19, 2023
DOI
Volume 8, Issue 84, Page 4930
Authors
Christopher B. Anderson ORCID
Earth Observation Lab, Planet Labs PBC, San Francisco, CA, USA, Center for Conservation Biology, Stanford University, Stanford, CA, USA
Editor
Gracielle Higino ORCID
Tags
biogeography species distribution modeling gesopatial analysis machine learning
View PDF Review Thread Software Archive

Citation (CITATION.cff) 

cff-version: "1.2.0"
authors:
- family-names: Anderson
  given-names: Christopher B.
  orcid: "https://orcid.org/0000-0001-7392-4368"
doi: 10.5281/zenodo.7813017
message: If you use this software, please cite our article in the
  Journal of Open Source Software.
preferred-citation:
  authors:
  - family-names: Anderson
    given-names: Christopher B.
    orcid: "https://orcid.org/0000-0001-7392-4368"
  date-published: 2023-04-19
  doi: 10.21105/joss.04930
  issn: 2475-9066
  issue: 84
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 4930
  title: "elapid: Species distribution modeling tools for Python"
  type: article
  url: "https://joss.theoj.org/papers/10.21105/joss.04930"
  volume: 8
title: "elapid: Species distribution modeling tools for Python"

GitHub Events

Total
  • Create event: 6
  • Release event: 3
  • Issues event: 3
  • Watch event: 12
  • Delete event: 5
  • Issue comment event: 7
  • Push event: 11
  • Pull request review comment event: 2
  • Pull request review event: 4
  • Pull request event: 7
  • Fork event: 5
Last Year
  • Create event: 6
  • Release event: 3
  • Issues event: 3
  • Watch event: 12
  • Delete event: 5
  • Issue comment event: 7
  • Push event: 11
  • Pull request review comment event: 2
  • Pull request review event: 4
  • Pull request event: 7
  • Fork event: 5

Committers

Last synced: 5 months ago

All Time
  • Total Commits: 405
  • Total Committers: 1
  • Avg Commits per committer: 405.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 5
  • Committers: 1
  • Avg Commits per committer: 5.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
earth-chris c****a@s****i 405
Committer Domains (Top 20 + Academic)
salo.ai: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 38
  • Total pull requests: 70
  • Average time to close issues: 4 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 7
  • Total pull request authors: 5
  • Average comments per issue: 1.03
  • Average comments per pull request: 0.24
  • Merged pull requests: 64
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 8
  • Average time to close issues: 8 days
  • Average time to close pull requests: about 7 hours
  • Issue authors: 2
  • Pull request authors: 3
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.63
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • earth-chris (28)
  • gabrieldansereau (5)
  • jeffreysmith-jrs (1)
  • aFewThings (1)
  • jcrangel (1)
  • bobilong (1)
  • BachirNILU (1)
Pull Request Authors
  • earth-chris (67)
  • butterman0 (1)
  • osgeokr (1)
  • gabrieldansereau (1)
  • PC-FSU (1)
Top Labels
Issue Labels
bug (16) enhancement (12) documentation (10) low priority (7) high priority (4) help wanted (1) science (1)
Pull Request Labels
enhancement (25) documentation (17) bug (14) science (2) high priority (1) low priority (1)

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 950 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 41
  • Total maintainers: 1
proxy.golang.org: github.com/earth-chris/elapid
  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 4 months ago
pypi.org: elapid

Species distribution modeling tools

  • Versions: 26
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 950 Last month
Rankings
Dependent packages count: 10.1%
Average: 16.4%
Downloads: 17.5%
Dependent repos count: 21.6%
Maintainers (1)
earth-chris
Last synced: 4 months ago
conda-forge.org: elapid
  • Homepage: https://elapid.org
  • License: MIT
  • Latest release: 0.3.18
    published about 3 years ago
  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Average: 48.0%
Stargazers count: 49.6%
Dependent packages count: 51.2%
Forks count: 57.4%
Last synced: 4 months ago

Dependencies

requirements.txt pypi
  • descartes >=1.1.0
  • geopandas >=0.7.0
  • glmnet >=2.2.0
  • numpy >=1.18
  • pandas >=1.0.3
  • rasterio >=1.2.1
  • scikit-learn >=0.22.2
  • shapely >=1.7.0
  • tqdm >=4.60.0
.github/workflows/deploy-docs.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
.github/workflows/os-tests.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
.github/workflows/publish-pypi.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • pypa/gh-action-pypi-publish release/v1 composite
.github/workflows/run-pytest.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
setup.py pypi