Recent Releases of parabricks-genomics-nf
parabricks-genomics-nf - v1.1.0
What's Changed
- Fix typo re: feature request by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/28
- Change glnexus container by @calizilla in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/29
Full Changelog: https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/compare/v1.0.0...v1.1.0
- Nextflow
Published by georgiesamaha almost 2 years ago
parabricks-genomics-nf - v1.0.0
What's Changed
- First update: basic workflow structure, check inputs, and optional fasta indexing by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/1
- Add fq2bam module by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/7
- Add deepvariant module by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/9
- Add glnexus joint genotype and bcf > vcf conversion modules by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/12
- Add GATK CollectBamMetrics module by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/14
- Add variant annotation with VEP by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/16
- Add some QC reporting by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/19
- added account, lstorage and SingCache flexibility by @calizilla in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/18
- Configure for Gadi by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/20
- Create CITATION.cff by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/23
- Add test data for execution testing by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/25
- Add workflow diagram by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/26
- Add acknowledgements and citation by @georgiesamaha in https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/pull/27
Full Changelog: https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/commits/v1.0.0
- Nextflow
Published by georgiesamaha about 2 years ago