REMORA - v1.3

What's Changed

• get build system ready to include fortran by @asalmgren in https://github.com/seahorce-scidac/REMORA/pull/370
• Framework for calling Fortran functions by @asalmgren in https://github.com/seahorce-scidac/REMORA/pull/371
• add notes to docs about netcdf error by @hklion in https://github.com/seahorce-scidac/REMORA/pull/372
• removed mask_psi loading by @emmashie in https://github.com/seahorce-scidac/REMORA/pull/373
• allow user to specify time variable name in netcdf file by @hklion in https://github.com/seahorce-scidac/REMORA/pull/374
• only read in boundary data required by boundary config and fix floating point issue in dt check by @hklion in https://github.com/seahorce-scidac/REMORA/pull/376
• add empty FABs to boundary condition data structures so the filler knows where to look by @hklion in https://github.com/seahorce-scidac/REMORA/pull/377
• add docs about GPU CTest by @hklion in https://github.com/seahorce-scidac/REMORA/pull/378
• Docstrings by @hklion in https://github.com/seahorce-scidac/REMORA/pull/379
• Make docs workflow run both on push and pull_request by @jmsexton03 in https://github.com/seahorce-scidac/REMORA/pull/380
• patch netcdf write by @hklion in https://github.com/seahorce-scidac/REMORA/pull/381
• Patch docs by @hklion in https://github.com/seahorce-scidac/REMORA/pull/382
• make sure MPI_Comm in amrex namespace to match AMReX changes by @hklion in https://github.com/seahorce-scidac/REMORA/pull/383
• paper updates for JOSS by @hklion in https://github.com/seahorce-scidac/REMORA/pull/384
• fix paper citations by @hklion in https://github.com/seahorce-scidac/REMORA/pull/385
• fix citations again by @hklion in https://github.com/seahorce-scidac/REMORA/pull/386
• Another attempt at citations by @hklion in https://github.com/seahorce-scidac/REMORA/pull/387
• more citation formatting by @hklion in https://github.com/seahorce-scidac/REMORA/pull/388
• ocean_times is now a vector and no longer hardcoded size by @hklion in https://github.com/seahorce-scidac/REMORA/pull/389
• Increase tolerance for BoundaryLayer ctest and add a note to README by @hklion in https://github.com/seahorce-scidac/REMORA/pull/390
• add summary paragraph about REMORA to docs by @hklion in https://github.com/seahorce-scidac/REMORA/pull/391
• add a quickstart to docs and a few lines on amrvis by @hklion in https://github.com/seahorce-scidac/REMORA/pull/392
• add ability to specify multiple time-consecutive boundary data files by @hklion in https://github.com/seahorce-scidac/REMORA/pull/393
• Add option to output plot and checkpoint files at simulation time interval by @hklion in https://github.com/seahorce-scidac/REMORA/pull/394
• Minor changes in paper.md as part of the JOSS Editorial Process by @jatkinson1000 in https://github.com/seahorce-scidac/REMORA/pull/395

New Contributors

• @emmashie made their first contribution in https://github.com/seahorce-scidac/REMORA/pull/373
• @jatkinson1000 made their first contribution in https://github.com/seahorce-scidac/REMORA/pull/395

Full Changelog: https://github.com/seahorce-scidac/REMORA/compare/v1.2...v1.3

Scientific Software - Peer-reviewed - C++
Published by hklion 9 months ago

REMORA - v1.2

What's Changed

• Add framework to read in time series data from netcdf file (useful for winds and surface fluxes) by @hklion in https://github.com/seahorce-scidac/REMORA/pull/360
• throw an error when finding nan or inf on writing output by @hklion in https://github.com/seahorce-scidac/REMORA/pull/361
• fix typos by @hklion in https://github.com/seahorce-scidac/REMORA/pull/362
• move application of BCs to cons variables to advance3d from advance3d_ml by @hklion in https://github.com/seahorce-scidac/REMORA/pull/363
• Add nudging to climatology by @hklion in https://github.com/seahorce-scidac/REMORA/pull/364
• fix gpu build for climatology by @hklion in https://github.com/seahorce-scidac/REMORA/pull/365
• add Csr and Csw to netcdf files by @hklion in https://github.com/seahorce-scidac/REMORA/pull/366
• Climatology docs by @hklion in https://github.com/seahorce-scidac/REMORA/pull/367
• actually add climatology page by @hklion in https://github.com/seahorce-scidac/REMORA/pull/368
• fix typo in climatology docs by @hklion in https://github.com/seahorce-scidac/REMORA/pull/369

Full Changelog: https://github.com/seahorce-scidac/REMORA/compare/v1.1...v1.2

Scientific Software - Peer-reviewed - C++
Published by hklion 10 months ago

REMORA - v1.1

What's Changed

Key changes * Added bulk flux parametrization * The prob class is now a derived class from prob_common

• fix namespacing in documentation by @hklion in https://github.com/seahorce-scidac/REMORA/pull/342
• Update paper.bib by @hklion in https://github.com/seahorce-scidac/REMORA/pull/343
• update docs with scaling and mesh refinement by @hklion in https://github.com/seahorce-scidac/REMORA/pull/344
• adjust boxes to avoid crash by @hklion in https://github.com/seahorce-scidac/REMORA/pull/345
• Update GitHub runner to ubuntu-24.04 by @WeiqunZhang in https://github.com/seahorce-scidac/REMORA/pull/346
• Adapt build to link with MOAB by @iulian787 in https://github.com/seahorce-scidac/REMORA/pull/347
• update scaling plots and texts by @hklion in https://github.com/seahorce-scidac/REMORA/pull/348
• add option to build with MOAB by @hklion in https://github.com/seahorce-scidac/REMORA/pull/349
• fix typo by @hklion in https://github.com/seahorce-scidac/REMORA/pull/350
• add warning about netcdf file size being too large by @hklion in https://github.com/seahorce-scidac/REMORA/pull/351
• Create prob_common class; prob inherits by @hklion in https://github.com/seahorce-scidac/REMORA/pull/353
• Bulk flux parametrization by @hklion in https://github.com/seahorce-scidac/REMORA/pull/352
• Further prob_common by @hklion in https://github.com/seahorce-scidac/REMORA/pull/354
• modernize inputs by @hklion in https://github.com/seahorce-scidac/REMORA/pull/355
• add rdrag2 or ZoBot to checkpoints when using them by @hklion in https://github.com/seahorce-scidac/REMORA/pull/356
• Buoy bvf by @hklion in https://github.com/seahorce-scidac/REMORA/pull/357
• revert buoy2 test by @hklion in https://github.com/seahorce-scidac/REMORA/pull/358
• winds are defined at rho points by @hklion in https://github.com/seahorce-scidac/REMORA/pull/359

Full Changelog: https://github.com/seahorce-scidac/REMORA/compare/v1.0.1...v1.1

Scientific Software - Peer-reviewed - C++
Published by hklion 11 months ago

REMORA - v1.0.1

What's Changed

• ParticlesOverSeaMount bathymetry should be flat by @hklion in https://github.com/seahorce-scidac/REMORA/pull/339
• look for remora.bc.{varname} rather than bc.{varname} by @hklion in https://github.com/seahorce-scidac/REMORA/pull/340
• fix problo/hi prefix in inputscf_orlanski by @hklion in https://github.com/seahorce-scidac/REMORA/pull/341

Full Changelog: https://github.com/seahorce-scidac/REMORA/compare/v1.0.0...v1.0.1

Scientific Software - Peer-reviewed - C++
Published by hklion about 1 year ago

REMORA - REMORA v1.0.0

Scientific Software - Peer-reviewed - C++
Published by hklion about 1 year ago