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https://github.com/apetkau/irida

Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

https://github.com/apetkau/irida

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

Basic Info
  • Host: GitHub
  • Owner: apetkau
  • License: apache-2.0
  • Language: Java
  • Default Branch: development
  • Homepage: https://irida.ca
  • Size: 456 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Fork of phac-nml/irida
Created over 7 years ago · Last pushed about 3 years ago

https://github.com/apetkau/irida/blob/development/ 

[![Integration Tests](https://github.com/phac-nml/irida/workflows/Integration%20Tests/badge.svg?branch=development&event=schedule)](https://github.com/phac-nml/irida/actions?query=branch%3Adevelopment)
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[![Gitter](https://img.shields.io/gitter/room/phac-nml/irida.svg)](https://gitter.im/irida-project/Lobby)

IRIDA
=====

IRIDA is Canadas Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology.  More information can be found in the following links.

Important Links
---------------

* Main Site: 
* Documentation
    * Main: 
    * Download: 
* Available Pipeline Plugins: 


Contributing to IRIDA
---------------------
IRIDA is primarily developed by the IRIDA consortium, but the development team is happy to accept contributions from the community.  See our [contributing guide](CONTRIBUTING.md) for more information.

Contact the IRIDA Team
----------------------
* To ask general or usage questions, email the IRIDA team at IRIDA-mail@sfu.ca
* Report bugs, suggest features, or contribute code on [GitHub](http://github.com/phac-nml/irida)
* Chat with the developers on [Gitter](https://gitter.im/irida-project/)

Citation
--------

The IRIDA manuscript is in preparation. A preprint is available on bioRxiv:

Thomas C Matthews, Franklin R Bristow, Emma J Griffiths, Aaron Petkau, Josh Adam, Damion Dooley, Peter Kruczkiewicz, John Curatcha, Jennifer Cabral, Dan Fornika, Geoffrey L. Winsor, Melanie Courtot, Claire Bertelli, Ataollah Roudgar, Pedro Feijao, Philip Mabon, Eric Enns, Joel Thiessen, Alexander Keddy, Judith Isaac-Renton, Jennifer L. Gardy, Patrick Tang, The IRIDA Consortium, Joo A Carrio, Leonid Chindelevitch, Cedric Chauve, Morag R Graham, Andrew G McArthur, Eduardo N Taboada, Robert G Beiko, Fiona SL Brinkman, William WL Hsiao, Gary Van Domselaar. 2018. **The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform**. bioRxiv 381830; doi: .

Additional related publications are available on .

Owner

  • Name: Aaron Petkau
  • Login: apetkau
  • Kind: user
  • Company: Public Health Agency of Canada

Bioinformatician with the Public Health Agency of Canada.

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