https://github.com/aphp/eds-pseudo - v0.4.0

• Added eds_pseudo.dates_normalizer to parse ML detected dates and extract their value and format.
• Support empty doc._.context field
• Update EDS-NLP to v0.10.7:
  • fix somes issues with jsonl loading
  • more transformer overriding options
  • fix out-of-memory issues (auto split transformer input depending on the available memory)
  • fixes some multiprocessing deadlock issues
  • add chunk sorting option to the lazy collection set_processing method
• Replace gen_dataset/train.jsonl with the original fictitious templates and the dataset generation script.
• Update the README with the instructions to download the public pre-trained model.
• Improve packaging to add evaluation results to the model's meta field and packaged model README (for HF)

- Python
Published by percevalw about 2 years ago

https://github.com/aphp/eds-pseudo - v0.2.0

Changelog

Many fixes along the publication of our article: - committed the missing script infer.py - changed config default bert model to camembert-base - put config.cfg as a dependency, not params - default to cpu training - allow for missing metadata (i.e. omop's note_class_source_value) - tests for the rule-based components - code documentation and cleaning - experiment and analysis scripts - charts and tables in the Results page of our documentation

Pull Requests

• Article updates by @percevalw in https://github.com/aphp/eds-pseudo/pull/2
• chore: clean docs and scripts by @percevalw in https://github.com/aphp/eds-pseudo/pull/3
• docs: fix repository link by @bdura in https://github.com/aphp/eds-pseudo/pull/1
• fix: main branch CI + github badges by @percevalw in https://github.com/aphp/eds-pseudo/pull/4
• fix: add missing infer script and post-publication fixes by @percevalw in https://github.com/aphp/eds-pseudo/pull/6

New Contributors

• @percevalw made their first contribution in https://github.com/aphp/eds-pseudo/pull/2
• @bdura made their first contribution in https://github.com/aphp/eds-pseudo/pull/1

Full Changelog: https://github.com/aphp/eds-pseudo/commits/v0.2.0

- Python
Published by percevalw almost 3 years ago