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imagej_dummy_scripts

My awkward scripts for making image processing easier.

https://github.com/lastjunglist/imagej_dummy_scripts

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.9%) to scientific vocabulary

Keywords

image-processing imagej imagej-macro
Last synced: 6 months ago · JSON representation ·

Repository

My awkward scripts for making image processing easier.

Basic Info
  • Host: GitHub
  • Owner: lastjunglist
  • Language: ImageJ Macro
  • Default Branch: main
  • Homepage:
  • Size: 12.7 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
image-processing imagej imagej-macro
Created about 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Citation

README.md

Hello! I am a humble bioengineer with 0 life experience in coding, and this rep is for keeping my ugly scripts to get some easy ImageJ stuff automated.

Grayscaletocolor

This script was written for ImageJ 1.54d. If the output of your microscope is a grayscale image and you'd like it to be coloured in red, green or blue, this script will enable you to batch-process a folder of images and create an output folder containing the result.

Cellareameasurement

After live/dead imaging of spheroids on the confocal, I got a Z-stack series of images from two channels. I exported images as greyscale, and eventually in the folder I had tiff files with the names ending by ch00 (for green) and ch01 (for red). I wanted to calculate the total area of green (live) and red (dead) cells in each layer of my z-stack to calculate the ratio afterwards. This script enables me to do so.

Owner

  • Login: lastjunglist
  • Kind: user

Citation (Citation.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Menshikh"
  given-names: "Ksenia"
  orcid: "https://orcid.org/0000-0002-9732-2780"
title: "ImageJ_Dummy_scripts"
version: 1.0.0
date-released: 2024-03-25
url: "https://github.com/lastjunglist/ImageJ_Dummy_scripts"

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