https://github.com/aqlaboratory/rgn2
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: aqlaboratory
- Language: Python
- Default Branch: master
- Size: 17.1 MB
Statistics
- Stars: 107
- Watchers: 10
- Forks: 28
- Open Issues: 4
- Releases: 0
Created almost 7 years ago
· Last pushed over 2 years ago
Metadata Files
Readme
README.md
RGN2
This is the reference implementation of recurrent geometric network-2 (RGN2), described in the paper Single-sequence protein structure prediction using a language model and deep learning.
Note: We recommend using RGN2 primarily for prediction of orphan or de novo proteins. For proteins with known homologs we suggest using AlphaFold2 or OpenFold.
Usage
Use the RGN2 Colab notebook to predict the 3D structures for orphan or de novo protein sequences.
Reference
Owner
- Name: AQ Laboratory
- Login: aqlaboratory
- Kind: organization
- Email: m.alquraishi@columbia.edu
- Location: Columbia University
- Website: aqlab.io
- Twitter: MoAlQuraishi
- Repositories: 17
- Profile: https://github.com/aqlaboratory
GitHub Events
Total
- Watch event: 6
- Fork event: 1
Last Year
- Watch event: 6
- Fork event: 1
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 11
- Total pull requests: 1
- Average time to close issues: about 2 months
- Average time to close pull requests: N/A
- Total issue authors: 10
- Total pull request authors: 1
- Average comments per issue: 1.73
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- HWaymentSteele (2)
- phiweger (1)
- menhart2 (1)
- wu99271053 (1)
- shawinbetter (1)
- burunduk57 (1)
- Lsz-20 (1)
- maarten-devries (1)
- Lucie02Rose (1)
- DaRinker (1)
Pull Request Authors
- aalksii (1)