colrevplos

https://github.com/olgagirona/colrevplos

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 4 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (12.8%) to scientific vocabulary

Last synced: 10 months ago · JSON representation ·

Repository

Basic Info

Host: GitHub
Owner: olgagirona
License: mit
Language: Python
Default Branch: main
Size: 204 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 0

Created over 1 year ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog Contributing License Code of conduct Citation Security

[![DOI](https://zenodo.org/badge/363073613.svg)](https://zenodo.org/badge/latestdoi/363073613) [![PyPI - Version](https://img.shields.io/pypi/v/colrev?color=blue)](https://pypi.org/project/colrev/) ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/colrev) [![License](https://img.shields.io/github/license/CoLRev-Ecosystem/colrev.svg)](https://github.com/CoLRev-Environment/colrev/releases/) ![Documentation Status](https://img.shields.io/github/actions/workflow/status/CoLRev-Ecosystem/colrev/docs_deploy.yml?label=documentation) ![GitHub Workflow Status](https://img.shields.io/github/actions/workflow/status/CoLRev-Ecosystem/colrev/tests.yml?label=tests) [![pre-commit.ci status](https://results.pre-commit.ci/badge/github/CoLRev-Ecosystem/colrev/main.svg)](https://results.pre-commit.ci/latest/github/CoLRev-Ecosystem/colrev/main) ![Coverage](https://raw.githubusercontent.com/CoLRev-Ecosystem/colrev/main/tests/coverage.svg) [![Codacy Badge](https://app.codacy.com/project/badge/Grade/bd4e44c6cda646e4b9e494c4c4d9487b)](https://app.codacy.com/gh/CoLRev-Environment/colrev/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade) ![GitHub last commit](https://img.shields.io/github/last-commit/CoLRev-Ecosystem/colrev) [![Downloads](https://static.pepy.tech/badge/colrev/month)](https://pepy.tech/project/colrev) [![OpenSSF Best Practices](https://bestpractices.coreinfrastructure.org/projects/7148/badge)](https://bestpractices.coreinfrastructure.org/projects/7148) [![SWH](https://archive.softwareheritage.org/badge/origin/https://github.com/CoLRev-Environment/colrev/)](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/CoLRev-Environment/colrev/) [![All Contributors](https://img.shields.io/badge/all_contributors-32-green.svg?style=flat-square)](#contributors)

Collaborative Literature Reviews (CoLRev)

CoLRev is an open-source environment for collaborative literature reviews. It integrates with differerent synthesis tools, takes care of the data, and facilitates Git-based collaboration.

To accomplish these goals, CoLRev advances the design of review technology at the intersection of methods, design, cognition, and community building. The following features stand out:

Supports all literature review steps: problem formulation, search, dedupe, (pre)screen, pdf retrieval and preparation, and synthesis
An open and extensible environment based on shared data and process standards
Builds on git and its transparent collaboration model for the entire literature review process
Offers a self-explanatory, fault-tolerant, and configurable user workflow
Operates a model for data quality, content curation, and reuse
Enables typological and methodological pluralism throughout the process

Demo

For details, consult the documentation.

Demo

You can try a live demonstration of CoLRev via GitHub codespaces: start demo.

Related work (preview)

The following shows a comparison of CoLRev with related tools.

[!Note] This is a preview. We plan to document and link the criteria, verify each cell, and invite the developers of the other tools to comment on the overview (documenting responses if the developers agree).

| Criteria | CoLRev | LitStudy | BUHOS | Covidence | |-----------------------------------------------|-----------------------------------|----------------------------------|---------------------------------|---------------------------------| | Review types | | | | | | Supports different genres of review methods | yes | | | | | Extensibility | yes | maybe | maybe | | | Process steps | | | | | | Review objectives and protocol | yes | yes | yes | yes | | Search | yes | yes | yes | yes | | Duplicate handling | yes | | maybe | maybe | | (Pre)Screen | yes | maybe | yes | yes | | Data extraction | yes | maybe | yes | yes | | Data analysis and quality appraisal | yes | maybe | yes | yes | | Synthesis and reporting | yes | yes | yes | yes | | Process qualities | | | | | | Extensibility | yes | yes | | | | Extensions | 102 | 0 | 0 | 0 | | Search updates | yes | | maybe | maybe | | Search: APIs | yes | yes | yes | | | Metadata preparation | yes | yes | yes | maybe | | Retract checks | yes | | | yes | | PDF retrieval | yes | | | yes | | PDF preparation | yes | | maybe | maybe | | Status tracking | yes | | yes | yes | | Collaboration | | | | | | Large teams | yes | maybe | maybe | maybe | | Algorithms | yes | yes | maybe | maybe | | Data management | | | | | | Transparency | yes | | | | | Validation | yes | | | | | Reporting (e.g., PRISMA) | yes | | yes | yes | | Publication of review | yes | yes | | | | Platform | | | | | | OSI-approved license | yes | yes | yes | | | Peer-reviewed | | yes | yes | | | Technology | Python | Python | Ruby | Proprietary | | Setup | Local or cloud | Local or cloud | Server | Server | | Interface | CLI, Programmatic (GUI planned) | Jupyter Notebook | Web-UI | Web-UI | | Contributors | GitHub contributors | | | NA | | Commits | GitHub total commits | | | NA | | Last commit | GitHub last commit | | | NA | | Pull requests | GitHub Issues or Pull Requests | | | NA | | Forks | GitHub forks | | | NA | | Last release | GitHub last release | | | NA | | Current release | Releases | | GitHub Release | NA |

Contributing, changes, and releases

Contributions, code and features are always welcome

See contributing guidelines, help page, and github repository.
Bug reports or feedback? Please use the issue tracker and let us know.
To get your work included, fork the repository, implement your changes, and create a pull request.

For further information, see tests, changes, and releases.

Contributors

_{Gerit Wagner} 💻 📖 🔣 🖋 💡	_{Julian Prester} 💻 📖 🔣 🖋 🐛 🤔	_{Tarin Mahmood} 💻 ⚠️ 📖	_dengdenglele 🔣 📖 ⚠️	_mhlbrsimon 💻	_{ossendorfluca} 💻	_{katharinaernst} 💻
_einfachjessi 💻	_Janus678 💻	_frxdericz 💻	_MalouSchmidt 💻	_{RheaDoesStuff} 💻	_Cohen2000 💻	_RobertAhr 💻
_{ThomasFleischmann} 💻	_AntonFrisch 💻	_{LouisLangenhan} 💻 📖	_{Peter Eckhardt} 💻 📖	_{User123projekt} 💻 📖	_LuminousLynx 💻 📖	_koljarinne 💻
_{Karl Schnickmann} 💻	_edensarrival 💻	_U1TIM4T3 💻	_annaglr 💻	_0xmtyset 💻	_tobiaspffl 💻	_{CelinaSchwarz} 💻
_{QuynhMaiNguyen} 💻	_pmao0907 💻	_MingxinJiang 💻	_JohannesDiel 💻

License

This project is distributed under the MIT License the documentation is distributed under the CC-0 license. If you contribute to the project, you agree to share your contribution following these licenses.

Citing CoLRev

Please cite the project as follows:

Wagner, G. and Prester, J. (2024) CoLRev - An open-source environment for Collaborative Literature Reviews. Available at https://github.com/CoLRev-Environment/colrev. doi:10.5281/zenodo.11668338

Owner

Login: olgagirona
Kind: user

Repositories: 1
Profile: https://github.com/olgagirona

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Wagner"
  given-names: "Gerit"
  orcid: "https://orcid.org/0000-0003-3926-7717"
- family-names: "Prester"
  given-names: "Julian"
  orcid: "https://orcid.org/0000-0003-2682-8036"
title: "CoLRev: An open-source environment for collaborative reviews"
version: 0.13.0
identifiers:
  - type: doi
    value: 10.5281/zenodo.13889524
date-released: 2024-10-04
url: "https://github.com/CoLRev-Environment/colrev"

GitHub Events

Total

Delete event: 1
Member event: 1
Public event: 1
Push event: 14
Pull request event: 2
Gollum event: 8
Create event: 11

Last Year

Delete event: 1
Member event: 1
Public event: 1
Push event: 14
Pull request event: 2
Gollum event: 8
Create event: 11

Dependencies

.github/workflows/docs_deploy.yml actions

actions/checkout v2 composite
actions/deploy-pages v1 composite
actions/setup-python v2 composite
actions/upload-pages-artifact v1 composite

.github/workflows/docs_make.yml actions

actions/checkout v3 composite
actions/setup-python v2 composite

.github/workflows/poetry_update.yml actions

actions/checkout v3 composite
repo-sync/pull-request v2 composite

.github/workflows/publish_pypi.yml actions

actions/checkout v3 composite

.github/workflows/tests.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite

.devcontainer/Dockerfile docker

mcr.microsoft.com/vscode/devcontainers/python 3.12-bullseye build

colrev/packages/abi_inform_proquest/pyproject.toml pypi

python >=3.8, <4

colrev/packages/acm_digital_library/pyproject.toml pypi

python >=3.8, <4

colrev/packages/add_journal_ranking/pyproject.toml pypi

python >=3.8, <4

colrev/packages/ais_library/pyproject.toml pypi

python >=3.8, <4

colrev/packages/arxiv/pyproject.toml pypi

feedparser ^6.0.10
python >=3.8, <4

colrev/packages/bibliography_export/pyproject.toml pypi

python >=3.8, <4

colrev/packages/blank/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_cli_pdf_get_man/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_cli_pdf_prep_man/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_cli_prescreen/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_cli_screen/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_curation/pyproject.toml pypi

python >=3.8, <4

colrev/packages/colrev_project/pyproject.toml pypi

pandasql ^0.7.3
python >=3.8, <4

colrev/packages/conceptual_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/conditional_prescreen/pyproject.toml pypi

python >=3.8, <4

colrev/packages/critical_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/crossref/pyproject.toml pypi

python >=3.8, <4

colrev/packages/curated_masterdata/pyproject.toml pypi

python >=3.8, <4

colrev/packages/curation_full_outlet_dedupe/pyproject.toml pypi

python >=3.8, <4

colrev/packages/curation_missing_dedupe/pyproject.toml pypi

python >=3.8, <4

colrev/packages/dblp/pyproject.toml pypi

python >=3.8, <4

colrev/packages/dedupe/pyproject.toml pypi

python >=3.10, <4

colrev/packages/descriptive_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/doi_org/pyproject.toml pypi

python >=3.8, <4

colrev/packages/download_from_website/pyproject.toml pypi

beautifulsoup4 ^4.11.1
python >=3.8, <4

colrev/packages/ebsco_host/pyproject.toml pypi

python >=3.8, <4

colrev/packages/eric/pyproject.toml pypi

python >=3.8, <4

colrev/packages/europe_pmc/pyproject.toml pypi

python >=3.8, <4

colrev/packages/exclude_collections/pyproject.toml pypi

python >=3.8, <4

colrev/packages/exclude_complementary_materials/pyproject.toml pypi

python >=3.8, <4

colrev/packages/exclude_languages/pyproject.toml pypi

python >=3.8, <4

colrev/packages/exclude_non_latin_alphabets/pyproject.toml pypi

alphabet-detector ^0.0.7
python >=3.8, <4

colrev/packages/export_man_prep/pyproject.toml pypi

python >=3.8, <4

colrev/packages/files_dir/pyproject.toml pypi

python >=3.8, <4

colrev/packages/general_polish/pyproject.toml pypi

python >=3.8, <4

colrev/packages/get_doi_from_urls/pyproject.toml pypi

python >=3.8, <4

colrev/packages/get_masterdata_from_citeas/pyproject.toml pypi

python >=3.8, <4

colrev/packages/get_masterdata_from_doi/pyproject.toml pypi

python >=3.8, <4

colrev/packages/get_year_from_vol_iss_jour/pyproject.toml pypi

python >=3.8, <4

colrev/packages/github/pyproject.toml pypi

PyGithub ^2.3.0
click ^8.1.6
python >=3.8, <4

colrev/packages/github_pages/pyproject.toml pypi

python >=3.8, <4

colrev/packages/google_scholar/pyproject.toml pypi

python >=3.8, <4

colrev/packages/grobid_tei/pyproject.toml pypi

python >=3.8, <4

colrev/packages/ieee/pyproject.toml pypi

python >=3.8, <4

colrev/packages/jstor/pyproject.toml pypi

python >=3.8, <4

colrev/packages/literature_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/local_index/pyproject.toml pypi

python >=3.8, <4

colrev/packages/meta_analysis/pyproject.toml pypi

python >=3.8, <4

colrev/packages/methodological_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/narrative_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/obsidian/pyproject.toml pypi

python >=3.8, <4

colrev/packages/ocrmypdf/poetry.lock pypi

colrev/packages/ocrmypdf/pyproject.toml pypi

python >=3.8, <4

colrev/packages/open_alex/pyproject.toml pypi

pyalex ^0.10
python >=3.8, <4

colrev/packages/open_citations_forward_search/pyproject.toml pypi

python >=3.8, <4

colrev/packages/open_library/pyproject.toml pypi

python >=3.8, <4

colrev/packages/osf/pyproject.toml pypi

python >=3.8, <4

colrev/packages/paper_md/pyproject.toml pypi

python >=3.8, <4

colrev/packages/pdf_backward_search/pyproject.toml pypi

python >=3.8, <4

colrev/packages/plos/pyproject.toml pypi

python >=3.9, <4

colrev/packages/prep_man_curation_jupyter/pyproject.toml pypi

python >=3.8, <4

colrev/packages/prescreen_table/pyproject.toml pypi

python >=3.8, <4

colrev/packages/prisma/pyproject.toml pypi

python >=3.8, <4

colrev/packages/profile/pyproject.toml pypi

python >=3.8, <4

colrev/packages/psycinfo/pyproject.toml pypi

python >=3.8, <4

colrev/packages/pubmed/pyproject.toml pypi

python >=3.8, <4

colrev/packages/qualitative_systematic_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/ref_check/pyproject.toml pypi

python >=3.9, <4

colrev/packages/remove_broken_ids/pyproject.toml pypi

python >=3.8, <4

colrev/packages/remove_coverpage/pyproject.toml pypi

python >=3.8, <4

colrev/packages/remove_last_page/pyproject.toml pypi

python >=3.8, <4

colrev/packages/remove_urls_with_500_errors/pyproject.toml pypi

python >=3.8, <4

colrev/packages/scientometric/pyproject.toml pypi

python >=3.8, <4

colrev/packages/scope_prescreen/pyproject.toml pypi

python >=3.8, <4

colrev/packages/scoping_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/scopus/pyproject.toml pypi

python >=3.8, <4

colrev/packages/screen_table/pyproject.toml pypi

python >=3.8, <4

colrev/packages/semanticscholar/pyproject.toml pypi

python >=3.8, <4
semanticscholar ^0.6.0

colrev/packages/source_specific_prep/pyproject.toml pypi

python >=3.8, <4

colrev/packages/springer_link/pyproject.toml pypi

python >=3.8, <4

colrev/packages/structured/pyproject.toml pypi

python >=3.8, <4

colrev/packages/sync/pyproject.toml pypi

python >=3.8, <4

colrev/packages/synergy_datasets/pyproject.toml pypi

python >=3.8, <4

colrev/packages/taylor_and_francis/pyproject.toml pypi

python >=3.8, <4

colrev/packages/theoretical_review/pyproject.toml pypi

python >=3.8, <4

colrev/packages/trid/pyproject.toml pypi

python >=3.8, <4

colrev/packages/ui_web/pyproject.toml pypi

dash ^2.11.1
python >=3.8, <4

colrev/packages/umbrella/pyproject.toml pypi

python >=3.8, <4

colrev/packages/unknown_source/pyproject.toml pypi

python >=3.8, <4

colrev/packages/unpaywall/pyproject.toml pypi

python >=3.8, <4

colrev/packages/web_of_science/pyproject.toml pypi

python >=3.8, <4

colrev/packages/website_screenshot/pyproject.toml pypi

python >=3.8, <4

colrev/packages/wiley/pyproject.toml pypi

python >=3.8, <4

poetry.lock pypi

123 dependencies

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

colrevplos

Science Score: 67.0%

Repository

Basic Info

Statistics

Metadata Files

README.md

Collaborative Literature Reviews (CoLRev)

Demo

Related work (preview)

Contributing, changes, and releases

Contributors

License

Citing CoLRev

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Dependencies