https://github.com/aramis-lab/clinica-pydra-fsl
Pydra tasks for FSL designed for Clinica
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.2%) to scientific vocabulary
Keywords
Repository
Pydra tasks for FSL designed for Clinica
Basic Info
- Host: GitHub
- Owner: aramis-lab
- License: apache-2.0
- Language: Python
- Default Branch: main
- Homepage: https://aramis-lab.github.io/clinica-pydra-fsl/
- Size: 241 KB
Statistics
- Stars: 3
- Watchers: 4
- Forks: 1
- Open Issues: 1
- Releases: 23
Topics
Metadata Files
README.md
pydra-fsl
Pydra tasks for FSL designed for Clinica.
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Available tasks
| Module | Tasks | |--------|--------------------------------------------------------------------------------------------------------------------| | bet | BET, RobustFOV | | eddy | Eddy, ApplyTopup, Topup | | fast | FAST | | flirt | FLIRT, ApplyXFM, ConcatXFM, ConvertXFM, InvertXFM, FixScaleSkew, Img2ImgCoord, Img2StdCoord, Std2ImgCoord | | fnirt | FNIRT, FNIRTFileUtils, ApplyWarp, ConvertWarp, InvWarp | | fugue | FUGUE, PrepareFieldmap, Prelude, SigLoss | | maths | (experimental) Maths, Mul | | susan | SUSAN | | utils | ChFileType, FFT, Info, Interleave, Merge, Orient, Reorient2Std, ROI, SelectVols, Slice, SmoothFill, Split, SwapDim |
Installation
console
pip install clinica-pydra-fsl
A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.
Development
This project is managed with Hatch:
console
pipx install hatch
To run the test suite:
console
hatch run test
To fix linting issues:
console
hatch fmt
License
This project is distributed under the terms of the Apache License, Version 2.0.
Owner
- Name: ARAMIS Lab
- Login: aramis-lab
- Kind: organization
- Location: Paris, France
- Website: www.aramislab.fr
- Twitter: AramisLabParis
- Repositories: 21
- Profile: https://github.com/aramis-lab
The Aramis Lab is a joint research team between CNRS, Inria, Inserm and Sorbonne University and belongs to the Paris Brain Institute (ICM).
GitHub Events
Total
- Pull request event: 2
- Create event: 3
Last Year
- Pull request event: 2
- Create event: 3
Issues and Pull Requests
Last synced: 6 months ago
Packages
- Total packages: 1
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Total downloads:
- pypi 17 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 3
pypi.org: clinica-pydra-fsl
Pydra tasks for FSL designed for Clinica
- Documentation: https://aramis-lab.github.io/clinica-pydra-fsl
- License: Apache Software License
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Latest release: 0.1.0
published almost 2 years ago
Rankings
Maintainers (3)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- pypa/gh-action-pypi-publish release/v1 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- pydra >=0.22
- actions/checkout v4 composite
- actions/configure-pages v4 composite
- actions/deploy-pages v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v5 composite
- actions/upload-artifact v3 composite
- actions/upload-pages-artifact v2 composite