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https://github.com/aramis-lab/clinica-pydra-ants

Pydra tasks for ANTs designed for Clinica

https://github.com/aramis-lab/clinica-pydra-ants

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Academic email domains
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.8%) to scientific vocabulary

Keywords

ants neuroimaging pydra
Last synced: 9 months ago · JSON representation

Repository

Pydra tasks for ANTs designed for Clinica

Basic Info
  • Host: GitHub
  • Owner: aramis-lab
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 60.5 KB
Statistics
  • Stars: 0
  • Watchers: 4
  • Forks: 0
  • Open Issues: 1
  • Releases: 7
Topics
ants neuroimaging pydra
Created almost 3 years ago · Last pushed 10 months ago
Metadata Files
Readme License

README.md

clinica-pydra-ants

PyPI - Version PyPI - Python Version

Pydra tasks for ANTs designed for Clinica

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

ANTs is a toolbox for multi-variate image registration, segmentation and statistical analysis.

Clinica is a software platform for clinical neuroimaging studies.

Table of Contents

Available Tasks

  • ApplyTransforms
  • CreateJacobianDeterminantImage
  • N4BiasFieldCorrection
  • Registration, registrationsyn, registrationsyn_quick

Installation

console pip install clinica-pydra-ants

A separate installation of ANTs is required to use this package.

An official conda package is available through conda-forge:

console conda install -c conda-forge ants

Development

This project is managed with Hatch:

console pipx install hatch

To run the test suite:

console hatch run test

To fix linting issues:

console hatch fmt

License

This project is distributed under the terms of the Apache License, Version 2.0.

Owner

  • Name: ARAMIS Lab
  • Login: aramis-lab
  • Kind: organization
  • Location: Paris, France

The Aramis Lab is a joint research team between CNRS, Inria, Inserm and Sorbonne University and belongs to the Paris Brain Institute (ICM).

GitHub Events

Total
  • Pull request event: 1
  • Create event: 2
Last Year
  • Pull request event: 1
  • Create event: 2

Issues and Pull Requests

Last synced: 10 months ago

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 23 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 2
  • Total maintainers: 3
pypi.org: clinica-pydra-ants

Pydra tasks for ANTs designed for Clinica

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 23 Last month
Rankings
Dependent packages count: 9.5%
Average: 36.2%
Dependent repos count: 62.9%
Maintainers (3)
aramis ghisvail NicolasGensollen
Last synced: 10 months ago

Dependencies

.github/workflows/publish.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • pypa/gh-action-pypi-publish release/v1 composite
pyproject.toml pypi
  • attrs >=22.1.0
  • pydra >=0.22
.github/workflows/ci.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite