https://github.com/aramis-lab/pydra-bids

Pydra tasks for BIDS I/O

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
✓
Committers with academic emails
1 of 4 committers (25.0%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (5.4%) to scientific vocabulary

Keywords

bids neuroimaging pydra

Keywords from Contributors

brain-imaging medical-imaging dicom workflow-engine labels alzheimer-disease convolutional-neural-network brainweb dataflow-engine

Last synced: 5 months ago · JSON representation

Repository

Pydra tasks for BIDS I/O

Basic Info

Host: GitHub
Owner: aramis-lab
License: apache-2.0
Language: Python
Default Branch: main
Homepage: https://aramis-lab.github.io/pydra-bids/
Size: 208 KB

Statistics

Stars: 2
Watchers: 5
Forks: 1
Open Issues: 1
Releases: 10

Archived

Topics

bids neuroimaging pydra

Created over 3 years ago · Last pushed almost 2 years ago

Metadata Files

Readme License

README.md

pydra-bids

Pydra tasks for BIDS I/O.

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

BIDS defines standards for organizing neuroimaging files and metadata.

This project provides tasks for reading from and writing to BIDS datasets.

Table of contents

Installation
Development
Licensing

Installation

console pip install pydra-bids

Development

This project is managed with Hatch:

console pipx install hatch

To run the test suite:

console hatch run test:no-cov

To fix linting issues:

console hatch run lint:fix

To check the documentation:

console hatch run docs:serve --open-browser

Licensing

This project is released under the terms of the Apache License, Version 2.0.

Owner

Name: ARAMIS Lab
Login: aramis-lab
Kind: organization
Location: Paris, France

Website: www.aramislab.fr
Twitter: AramisLabParis
Repositories: 21
Profile: https://github.com/aramis-lab

The Aramis Lab is a joint research team between CNRS, Inria, Inserm and Sorbonne University and belongs to the Paris Brain Institute (ICM).

GitHub Events

Total

Last Year

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 160
Total Committers: 4
Avg Commits per committer: 40.0
Development Distribution Score (DDS): 0.088

Top Committers

Name	Email	Commits
Ghislain Vaillant	g**t@i**g	146
Ghislain Vaillant	g**l@g**m	9
Ghislain Vaillant	g**l@u**m	3
dependabot[bot]	4**]@u**m	2

Committer Domains (Top 20 + Academic)

icm-institute.org: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time

Total issues: 0
Total pull requests: 69
Average time to close issues: N/A
Average time to close pull requests: about 9 hours
Total issue authors: 0
Total pull request authors: 2
Average comments per issue: 0
Average comments per pull request: 0.06
Merged pull requests: 66
Bot issues: 0
Bot pull requests: 13

Past Year

Issues: 0
Pull requests: 8
Average time to close issues: N/A
Average time to close pull requests: about 9 hours
Issue authors: 0
Pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.0
Merged pull requests: 8
Bot issues: 0
Bot pull requests: 8

View more stats

Top Authors

Issue Authors

Pull Request Authors

ghisvail (56)
dependabot[bot] (14)

Top Labels

Issue Labels

Pull Request Labels

dependencies (14) python (1)

Packages

Total packages: 1
Total downloads:
- pypi 701 last-month

Total dependent packages: 1
Total dependent repositories: 1
Total versions: 10
Total maintainers: 2

pypi.org: pydra-bids

Pydra tasks for BIDS I/O

Documentation: https://pydra-bids.readthedocs.io/
License: Apache Software License
Latest release: 0.0.10
published about 3 years ago

Versions: 10
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 701 Last month

Rankings

Dependent packages count: 4.7%

Downloads: 9.5%

Average: 12.0%

Dependent repos count: 21.7%

Maintainers (2)

aramis ghisvail

Last synced: 6 months ago

Dependencies

.github/workflows/docs.yaml actions

actions/checkout v3 composite
actions/configure-pages v3 composite
actions/deploy-pages v1 composite
actions/download-artifact v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
actions/upload-pages-artifact v1 composite

.github/workflows/publish.yaml actions

actions/checkout v3 composite
actions/setup-python v4 composite
pypa/gh-action-pypi-publish release/v1 composite

.github/workflows/test.yaml actions

actions/checkout v3 composite
actions/setup-python v4 composite

pyproject.toml pypi

ancpbids >=0.2,<0.3
pydra >=0.21