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Recent Releases of epitools

epitools - v0.0.13 - Added quality metric

What's Changed

  • Update issue templates by @Pablo1990 in https://github.com/epitools/epitools/pull/137
  • Adding citation file by @Pablo1990 in https://github.com/epitools/epitools/pull/136
  • Increase range of threshold sigma parameter by @Pablo1990 in https://github.com/epitools/epitools/pull/134
  • 121 increase test coverage by @Pablo1990 in https://github.com/epitools/epitools/pull/122
  • 142 add 3d quality metric by @Pablo1990 in https://github.com/epitools/epitools/pull/143

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.12...v0.0.13

- Python
Published by Pablo1990 about 1 year ago

epitools - v0.0.12 - New widge for a 2ch proj

What's Changed

  • 113 add updated information to pypi by @Pablo1990 in https://github.com/epitools/epitools/pull/114
  • Update README.md by @Pablo1990 in https://github.com/epitools/epitools/pull/115
  • Add new widget for 2ch proj by @giuliapaci in https://github.com/epitools/epitools/pull/117
  • Fixed previous fixed error for tests by @Pablo1990 in https://github.com/epitools/epitools/pull/118
  • Add dependency as requested by @Pablo1990 in https://github.com/epitools/epitools/pull/120

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.11...v0.0.12

- Python
Published by Pablo1990 over 2 years ago

epitools - v0.0.11

What's Changed

  • Improved description of project by @Pablo1990 in https://github.com/epitools/epitools/pull/110
  • Added and removed terms by @Pablo1990 in https://github.com/epitools/epitools/pull/106

New Contributors

  • @Pablo1990 made their first contribution in https://github.com/epitools/epitools/pull/110

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.10...v0.0.11

- Python
Published by Pablo1990 over 2 years ago

epitools - Tests are passing and bugfixing

What's Changed

  • Fix datatype numpy test issue and widget by @giuliapaci in https://github.com/epitools/epitools/pull/104

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.9...v0.0.10

- Python
Published by Pablo1990 almost 3 years ago

epitools - Add neighbour ids to output cell stats

What's Changed

  • Add neighbour ids to cell statistics by @giuliapaci in https://github.com/epitools/epitools/pull/103

New Contributors

  • @giuliapaci made their first contribution in https://github.com/epitools/epitools/pull/103

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.8...v0.0.9

- Python
Published by Pablo1990 almost 3 years ago

epitools - Fix sample dataset

What's Changed

  • Fix napari installation instructions and loading sample dataset by @paddyroddy in https://github.com/epitools/epitools/pull/101

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.7...v0.0.8

- Python
Published by paddyroddy almost 3 years ago

epitools - Expand `regionprops` data

What's Changed

  • Add recommended napari workflow dependencies by @paddyroddy in https://github.com/epitools/epitools/pull/91
  • Add example config for napari hub by @paddyroddy in https://github.com/epitools/epitools/pull/92
  • Pin min btrack version by @paddyroddy in https://github.com/epitools/epitools/pull/95
  • Add everything from regionprops by @paddyroddy in https://github.com/epitools/epitools/pull/93

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.6...v0.0.7

- Python
Published by paddyroddy almost 3 years ago

epitools - Add video demo to docs

What's Changed

  • Fix pixel spacing used when calculating cell stats by @p-j-smith in https://github.com/epitools/epitools/pull/80
  • Add initial docs for the napari plugin and Python api by @p-j-smith in https://github.com/epitools/epitools/pull/81
  • Update .readthedocs.yml by @paddyroddy in https://github.com/epitools/epitools/pull/84
  • Change videos in docs to MP4 by @paddyroddy in https://github.com/epitools/epitools/pull/85
  • Add videos to docs by @paddyroddy in https://github.com/epitools/epitools/pull/86

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.2...v0.0.6

- Python
Published by paddyroddy almost 3 years ago

epitools - Check videos online

What's Changed

  • Fix pixel spacing used when calculating cell stats by @p-j-smith in https://github.com/epitools/epitools/pull/80
  • Add initial docs for the napari plugin and Python api by @p-j-smith in https://github.com/epitools/epitools/pull/81
  • Update .readthedocs.yml by @paddyroddy in https://github.com/epitools/epitools/pull/84
  • Change videos in docs to MP4 by @paddyroddy in https://github.com/epitools/epitools/pull/85

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.2...v0.0.5

- Python
Published by paddyroddy almost 3 years ago

epitools - Fix PyPI

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.3...v0.0.4

- Python
Published by paddyroddy almost 3 years ago

epitools - Add docs

What's Changed

  • Fix pixel spacing used when calculating cell stats by @p-j-smith in https://github.com/epitools/epitools/pull/80
  • Add initial docs for the napari plugin and Python api by @p-j-smith in https://github.com/epitools/epitools/pull/81
  • Update .readthedocs.yml by @paddyroddy in https://github.com/epitools/epitools/pull/84

Full Changelog: https://github.com/epitools/epitools/compare/v0.0.2...v0.0.3

- Python
Published by paddyroddy almost 3 years ago

epitools - Improve metadata & instructions

What's Changed

  • Projection by @drmatthews in https://github.com/epitools/epitools/pull/9
  • Composite widget by @drmatthews in https://github.com/epitools/epitools/pull/13
  • Remove composite widget by @drmatthews in https://github.com/epitools/epitools/pull/17
  • Add project board update CI by @paddyroddy in https://github.com/epitools/epitools/pull/18
  • Improve linting and run on all files by @paddyroddy in https://github.com/epitools/epitools/pull/28
  • Fix failing CI by @p-j-smith in https://github.com/epitools/epitools/pull/30
  • Bump version number of add-to-project action by @paddyroddy in https://github.com/epitools/epitools/pull/32
  • Move to a pyproject.toml structure by @paddyroddy in https://github.com/epitools/epitools/pull/34
  • Update default widget values by @p-j-smith in https://github.com/epitools/epitools/pull/41
  • Remove 'z' axis from the projected image by @p-j-smith in https://github.com/epitools/epitools/pull/40
  • Fix issue with thread continually running by @p-j-smith in https://github.com/epitools/epitools/pull/38
  • Ensure labels of segmented image start from 1 by @p-j-smith in https://github.com/epitools/epitools/pull/43
  • Automatically select new Image layers by @p-j-smith in https://github.com/epitools/epitools/pull/45
  • Add initial widget for calculating cell statistics by @p-j-smith in https://github.com/epitools/epitools/pull/44
  • Use more appropraite sample data by @p-j-smith in https://github.com/epitools/epitools/pull/48
  • Add logging by @p-j-smith in https://github.com/epitools/epitools/pull/49
  • Colour 'Labels' layers by cell statistics by @p-j-smith in https://github.com/epitools/epitools/pull/53
  • Update installation instructions by @p-j-smith in https://github.com/epitools/epitools/pull/54
  • Move widget creation into a sub-package by @p-j-smith in https://github.com/epitools/epitools/pull/57
  • Implement custom isort sections for napari by @paddyroddy in https://github.com/epitools/epitools/pull/56
  • Read pixel spacing from tif files and use when calculating regionprops by @p-j-smith in https://github.com/epitools/epitools/pull/58
  • Don't assign result to unnecessary variable before return statement in naparigetreader by @p-j-smith in https://github.com/epitools/epitools/pull/59
  • Replace Slider widgest with SpinBoxes by @p-j-smith in https://github.com/epitools/epitools/pull/68
  • Fix badges by @paddyroddy in https://github.com/epitools/epitools/pull/70
  • Switch coverage to coveralls by @paddyroddy in https://github.com/epitools/epitools/pull/69
  • Use lcov format instead by @paddyroddy in https://github.com/epitools/epitools/pull/72
  • Simplify GitHub Actions by @paddyroddy in https://github.com/epitools/epitools/pull/73
  • Fix matrix typo by @paddyroddy in https://github.com/epitools/epitools/pull/74
  • Improve test coverage by @p-j-smith in https://github.com/epitools/epitools/pull/71
  • Drop 3.8 support by @paddyroddy in https://github.com/epitools/epitools/pull/75
  • Drop TestPyPI by @paddyroddy in https://github.com/epitools/epitools/pull/77
  • Improve look on PyPI by @paddyroddy in https://github.com/epitools/epitools/pull/78
  • Apply pixel scaling to images in the viewer and add an Image/Labels writer by @p-j-smith in https://github.com/epitools/epitools/pull/67

New Contributors

  • @drmatthews made their first contribution in https://github.com/epitools/epitools/pull/9
  • @paddyroddy made their first contribution in https://github.com/epitools/epitools/pull/18
  • @p-j-smith made their first contribution in https://github.com/epitools/epitools/pull/30

Full Changelog: https://github.com/epitools/epitools/commits/v0.0.2

- Python
Published by paddyroddy almost 3 years ago

epitools - Add to PyPI

What's Changed

  • Projection by @drmatthews in https://github.com/epitools/epitools/pull/9
  • Composite widget by @drmatthews in https://github.com/epitools/epitools/pull/13
  • Remove composite widget by @drmatthews in https://github.com/epitools/epitools/pull/17
  • Add project board update CI by @paddyroddy in https://github.com/epitools/epitools/pull/18
  • Improve linting and run on all files by @paddyroddy in https://github.com/epitools/epitools/pull/28
  • Fix failing CI by @p-j-smith in https://github.com/epitools/epitools/pull/30
  • Bump version number of add-to-project action by @paddyroddy in https://github.com/epitools/epitools/pull/32
  • Move to a pyproject.toml structure by @paddyroddy in https://github.com/epitools/epitools/pull/34
  • Update default widget values by @p-j-smith in https://github.com/epitools/epitools/pull/41
  • Remove 'z' axis from the projected image by @p-j-smith in https://github.com/epitools/epitools/pull/40
  • Fix issue with thread continually running by @p-j-smith in https://github.com/epitools/epitools/pull/38
  • Ensure labels of segmented image start from 1 by @p-j-smith in https://github.com/epitools/epitools/pull/43
  • Automatically select new Image layers by @p-j-smith in https://github.com/epitools/epitools/pull/45
  • Add initial widget for calculating cell statistics by @p-j-smith in https://github.com/epitools/epitools/pull/44
  • Use more appropraite sample data by @p-j-smith in https://github.com/epitools/epitools/pull/48
  • Add logging by @p-j-smith in https://github.com/epitools/epitools/pull/49
  • Colour 'Labels' layers by cell statistics by @p-j-smith in https://github.com/epitools/epitools/pull/53
  • Update installation instructions by @p-j-smith in https://github.com/epitools/epitools/pull/54
  • Move widget creation into a sub-package by @p-j-smith in https://github.com/epitools/epitools/pull/57
  • Implement custom isort sections for napari by @paddyroddy in https://github.com/epitools/epitools/pull/56
  • Read pixel spacing from tif files and use when calculating regionprops by @p-j-smith in https://github.com/epitools/epitools/pull/58
  • Don't assign result to unnecessary variable before return statement in naparigetreader by @p-j-smith in https://github.com/epitools/epitools/pull/59
  • Replace Slider widgest with SpinBoxes by @p-j-smith in https://github.com/epitools/epitools/pull/68
  • Fix badges by @paddyroddy in https://github.com/epitools/epitools/pull/70
  • Switch coverage to coveralls by @paddyroddy in https://github.com/epitools/epitools/pull/69
  • Use lcov format instead by @paddyroddy in https://github.com/epitools/epitools/pull/72
  • Simplify GitHub Actions by @paddyroddy in https://github.com/epitools/epitools/pull/73
  • Fix matrix typo by @paddyroddy in https://github.com/epitools/epitools/pull/74
  • Improve test coverage by @p-j-smith in https://github.com/epitools/epitools/pull/71
  • Drop 3.8 support by @paddyroddy in https://github.com/epitools/epitools/pull/75

New Contributors

  • @drmatthews made their first contribution in https://github.com/epitools/epitools/pull/9
  • @paddyroddy made their first contribution in https://github.com/epitools/epitools/pull/18
  • @p-j-smith made their first contribution in https://github.com/epitools/epitools/pull/30

Full Changelog: https://github.com/epitools/epitools/commits/v0.0.1

- Python
Published by paddyroddy almost 3 years ago