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https://github.com/arjunrajlaboratory/deeptile

Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

https://github.com/arjunrajlaboratory/deeptile

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

Basic Info
  • Host: GitHub
  • Owner: arjunrajlaboratory
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 70.7 MB
Statistics
  • Stars: 13
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

DeepTile

Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

General

DeepTile provides a standardized workflow for splitting large images into tiles of a specified size, processing tiles using regular Python functions, and stitching the processed tiles. DeepTile supports batch processing specifically designed for deep learning algorithms, featuring automatic padding and mini-batch generation.

Installation

Install DeepTile from PyPI.

pip install deeptile

Usage

See notebooks for examples of DeepTile usage for both TIFF and ND2 files.

Owner

  • Name: Arjun Raj's systems biology lab
  • Login: arjunrajlaboratory
  • Kind: organization

GitHub Events

Total
  • Create event: 3
  • Issues event: 1
  • Release event: 2
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 1
  • Push event: 4
  • Pull request review event: 1
  • Pull request event: 2
Last Year
  • Create event: 3
  • Issues event: 1
  • Release event: 2
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 1
  • Push event: 4
  • Pull request review event: 1
  • Pull request event: 2

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 2
  • Total pull requests: 2
  • Average time to close issues: 4 months
  • Average time to close pull requests: 1 day
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 1
  • Average time to close issues: 4 months
  • Average time to close pull requests: 2 days
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • tischi (1)
  • Eddymorphling (1)
Pull Request Authors
  • arjunrajlab (2)
  • zjniu (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

pyproject.toml pypi
  • dask *
  • nd2 *
  • numpy *
  • scikit-image *
  • tifffile *