https://github.com/arm61/daas_toby
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.9%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: arm61
- Language: Jupyter Notebook
- Default Branch: main
- Size: 899 MB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Analysis of radiation damage to phospholipid monolayers
This repository provides the analysis method for a series of phospholipid monolayer (at the air-water interface) systems undergoing radiation damage. The analysis performed herein has been developed by Andrew R. McCluskey, with input from Tom Arnold and Toby Robson.
This aim of this work is to investigate the mechanism of interaction between antioxidant additives and phospholipid monolayers.
Model
The model for the phospholipid monolayer is as follows:
```
air
tails
heads
water
``` Where there is interest in how the parameters change over time as they are exposed to the intense synchrotron radiation beam.
Bayesian Evidence
First, the Bayesian evidence for all permuations of the following parameters were found, tail thickness (tt), roughness (rough), tail solvation (phit) and head solvation (phih) was found.
These parameters were either constrainted to a single value as the radiation flux increases or allowed to vary.
The following constraints were imposed on all analyses:
- Head thickness - th = 10. (this is constrained due to correlation between the head and tail thicknesses in XRR analysis)
- Head Volume - mvh = 319.
- Tail Volume - mvt = 829.
- Roughness was taken to be conformal.
- Scale - scale = 1.
- Background - bkg = dataset.y.min() (minimum measured reflectometry value)
The Bayesian evidence was found as discussed in Sivia and Skilling for the monolayers 1, 4, 12, 22, and 33. This is plotted below
From this the ?? permutation was applied to all of the monolayers.
Time resolved analysis
Owner
- Name: Andrew McCluskey
- Login: arm61
- Kind: user
- Location: Copenhagen
- Company: European Spallation Source
- Website: https://mccluskey.scot
- Repositories: 8
- Profile: https://github.com/arm61
instrument data scientist @essneutron (he/him)
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0